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  1. Radiation-induced pulmonary fibrosis (RIPF) is a major side effect experienced for patients with thoracic cancers after radiotherapy. RIPF is poor prognosis and limited therapeutic options available in clinic. La...

    Authors: Zhao Ju, Huiji Pan, Can Qu, Liang Xiao, Meiling Zhou, Yin Wang, Jinhua Luo, Liangfang Shen, Pingkun Zhou and Ruixue Huang
    Citation: Biology Direct 2023 18:2
  2. Pancreatic cancer (PC) is a highly lethal malignancy that requires effective novel therapies. M2 macrophages are abundant in the PC microenvironment and promote cancer progression. Exosomes are emerging mediat...

    Authors: Ke Zhang, Yu-Jie Li, Lin-Jia Peng, Hui-Feng Gao, Lu-Ming Liu and Hao Chen
    Citation: Biology Direct 2023 18:1
  3. Metastasis constitutes one of the major causes of tumor-related death in gastric cancer (GC), and understanding key events in the initiation of this phenotypic switch may provide therapeutic opportunities. Lon...

    Authors: Yunxin Lu, Qi Meng, Long Bai, Ruobing Wang, Yong Sun, Jiaqi Li, Jun Fan and Tian Tian
    Citation: Biology Direct 2022 17:41
  4. ACTN4 is an actin-binding protein involved in many cellular processes, including cancer development. High ACTN4 expression is often associated with a poor prognosis. However, it has been identified as a positi...

    Authors: Daria Kriger, Ksenia Novitskaya, Giomar Vasileva, Ekaterina Lomert, Nikolai D. Aksenov, Nikolai A. Barlev and Dmitri Tentler
    Citation: Biology Direct 2022 17:40
  5. Originally discovered by Nielsen in 1991, peptide nucleic acids and other artificial genetic polymers have gained a lot of interest from the scientific community. Due to their unique biophysical features these...

    Authors: Gleb S. Ivanov, Vyacheslav G. Tribulovich, Nikolay B. Pestov, Temitope I. David, Abdul-Saleem Amoah, Tatyana V. Korneenko and Nikolai A. Barlev
    Citation: Biology Direct 2022 17:39
  6. Nuclear organisation and architecture are essential for the maintenance of genomic integrity as well as for the epigenetic regulations and gene expression. Disruption of lamin B1, major structural and function...

    Authors: Emanuele Panatta, Alessio Butera, Ivana Celardo, Marcel Leist, Gerry Melino and Ivano Amelio
    Citation: Biology Direct 2022 17:38
  7. In mouse liver hepatocytes, nearly half of the surface area of every mitochondrion is covered by wrappER, a wrapping-type of ER that is rich in fatty acids and synthesizes lipoproteins (VLDL) (Anastasia et al....

    Authors: Nicolò Ilacqua, Irene Anastasia, Danylo Aloshyn, Rana Ghandehari-Alavijeh, Emily Ann Peluso, Madelaine C. Brearley-Sholto, Leonardo V. Pellegrini, Andrea Raimondi, Thomas Q. de Aguiar Vallim and Luca Pellegrini
    Citation: Biology Direct 2022 17:37
  8. The major histocompatibility complex (MHC) and the killer cell immunoglobulin-like receptors (KIR) are key regulators of immune responses. The cynomolgus macaque, an Old World monkey species, can be applied as...

    Authors: Qingxiu Hu, Xiaoqi Huang, Yabin Jin, Rui Zhang, Aimin Zhao, Yiping Wang, Chenyun Zhou, Weixin Liu, Xunwei Liu, Chunhua Li, Guangyi Fan, Min Zhuo, Xiaoning Wang, Fei Ling and Wei Luo
    Citation: Biology Direct 2022 17:36
  9. Acute lung injury (ALI) is a major cause of respiratory failure in critically ill patients that results in significant morbidity and mortality. Recent studies indicate that cell-based therapies may be benefici...

    Authors: Lijuan Xu, Yunlou Zhu, Congye Li, Qixing Wang, Lijie Ma, Junjie Wang and Shouqin Zhang
    Citation: Biology Direct 2022 17:35
  10. The upregulated expression of CXCL1 has been validated in colorectal cancer patients. As a potential biotherapeutic target for colorectal cancer, the mechanism by which CXCL1 affects the development of colorec...

    Authors: Changhua Zhuo, Qiang Ruan, Xiangqian Zhao, Yangkun Shen and Ruirong Lin
    Citation: Biology Direct 2022 17:34
  11. Pancreatic cancer (PC) is highly malignant. Chemotherapy is the main treatment strategy, especially for patients with advanced PC. However, chemoresistance has always been a frequently encountered bottleneck. ...

    Authors: Chengjie Lin, Yan Wang, Yihong Dong, Shihui Lai, Liang Wang, Shangeng Weng and Xiang Zhang
    Citation: Biology Direct 2022 17:33
  12. Cardiac fibrosis is a leading cause of cardiac dysfunction in patients with diabetes. However, the underlying mechanisms of cardiac fibrosis remain unclear. This study aimed to investigate the role of the long...

    Authors: Tingwei Peng, Mingchuan Liu, Lang Hu, Dong Guo, Di Wang, Bingchao Qi, Gaotong Ren, Chenchen Hu, Feng Zhang, Hyung J. Chun, Liqiang Song, Jianqiang Hu and Yan Li
    Citation: Biology Direct 2022 17:32
  13. Small extracellular vesicles (sEVs) are emerging natural nanoplatforms in cancer diagnosis and therapy, through the incorporation of signal components or drugs in their structure. However, for their translatio...

    Authors: Ana Santos-Coquillat, Desiré Herreros-Pérez, Rafael Samaniego, María Isabel González, Lorena Cussó, Manuel Desco and Beatriz Salinas
    Citation: Biology Direct 2022 17:31
  14. Symbiotic relationships are ubiquitous in the biosphere. Inter-species symbiosis is impacted by intra-specific distinctions, in particular, those defined by the age structure of a population. Older individuals...

    Authors: Carsten O. S. Portner, Edward G. Rong, Jared A. Ramirez, Yuri I. Wolf, Angelique P. Bosse, Eugene V. Koonin and Nash D. Rochman
    Citation: Biology Direct 2022 17:30
  15. Colorectal cancer (CRC) is one of the most common malignant neoplasms worldwide. Although marker genes associated with CRC have been identified previously, only a few have fulfilled the therapeutic demand. The...

    Authors: Di Wang, Junye Liufu, Qiyuan Yang, Shengqun Dai, Jiaqi Wang and Biao Xie
    Citation: Biology Direct 2022 17:29
  16. The mechanism of cuproptosis, a novel copper-induced cell death by regulating tricarboxylic acid cycle (TCA)-related genes, has been reported to regulate oxidative phosphorylation system (OXPHOS) in cancers an...

    Authors: Shichao Long, Ya Wang, Yuqiao Chen, Tianshu Fang, Yuanbing Yao and Kai Fu
    Citation: Biology Direct 2022 17:28
  17. RNA–protein interactions are crucial for diverse biological processes. In prokaryotes, RNA–protein interactions enable adaptive immunity through CRISPR-Cas systems. These defence systems utilize CRISPR RNA (cr...

    Authors: Ho-min Park, Yunseol Park, Urta Berani, Eunkyu Bang, Joris Vankerschaver, Arnout Van Messem, Wesley De Neve and Hyunjin Shim
    Citation: Biology Direct 2022 17:27
  18. Metabolic reprogramming is commonly recognized as one important hallmark of cancers. Cancer cells present significant alteration of glucose metabolism, oxidative phosphorylation, and lipid metabolism. Recent f...

    Authors: Massimiliano Agostini, Mara Mancini and Eleonora Candi
    Citation: Biology Direct 2022 17:26
  19. Alamandine (Ala) is the newest identified peptide of the renin-angiotensin system and has protective effect on myocyte hypertrophy. However, it is still unclear whether Ala can alleviate heart failure (HF). Th...

    Authors: Kun Zhao, Tianhua Xu, Yukang Mao, Xiaoguang Wu, Dongxu Hua, Yanhui Sheng and Peng Li
    Citation: Biology Direct 2022 17:25
  20. Toll/Interleukin-1 receptor (TIR) domains are cytoplasmic domain that mediates receptor signalling. These domains are present in proteins like Toll-like receptors (TLR), its signaling adaptors and Interleukins...

    Authors: Shailya Verma and Ramanathan Sowdhamini
    Citation: Biology Direct 2022 17:24
  21. Recent years have witnessed a growing academic interest in the effects of lncRNAs on tumors. LINC01419 is found to facilitate proliferation and metastasis of lung adenocarcinoma (LUAD) cells, but there is a gr...

    Authors: Zhao Chen, Weijian Tang, Yuhan Zhou and Zhengfu He
    Citation: Biology Direct 2022 17:23
  22. Evolutionary rate is a key characteristic of gene families that is linked to the functional importance of the respective genes as well as specific biological functions of the proteins they encode. Accurate est...

    Authors: Svetlana Karamycheva, Yuri I. Wolf, Erez Persi, Eugene V. Koonin and Kira S. Makarova
    Citation: Biology Direct 2022 17:22
  23. Amphiregulin (AREG) is a ligand of epidermal growth factor receptor and participates in the fibrosis of multiple organs. However, whether AREG can regulate hypertrophic cardiomyopathy is not well known. This r...

    Authors: Mingyue Ji, Yun Liu, Zhi Zuo, Cheng Xu, Li Lin and Yong Li
    Citation: Biology Direct 2022 17:21
  24. Recently, microRNAs (miRNAs), have been extensively investigated in diseases. The upregulated expression of miR-19b-3p has been validated in patients with hypertrophic cardiomyopathy. Nonetheless, it regulator...

    Authors: Bihong Liao, Shaohong Dong, Zhenglei Xu, Fei Gao, Suihao Zhang and Ruijuan Liang
    Citation: Biology Direct 2022 17:20
  25. Cancer metabolism is largely altered compared to normal cells. This study aims to explore critical metabolism pathways in colon adenocarcinoma (COAD), and reveal the possible mechanism of their role in cancer ...

    Authors: Shuang Wu, Yuzhu Gong, Jianfang Chen, Xiang Zhao, Huimin Qing, Yan Dong, Sisi Li, Jianjun Li and Zhe Wang
    Citation: Biology Direct 2022 17:19
  26. “Can order spring from Chaos?” is the title of an extensive Report on Italian science published by NATURE on 12 May 1983 and written by Robert Walgate, the Chief European Correspondent. It is a twenty pages co...

    Authors: Maurizio Brunori
    Citation: Biology Direct 2022 17:18
  27. RNF8 is an E3 ligase identified as a critical DNA damage-responsive protein. Recently, multiple reports have shown that RNF8 could be used as an important therapeutic target for cancer chemo/radiotherapy. Howe...

    Authors: Chuanyang Liu, Jingyu Kuang, Yuxuan Wang, Ting Duan, Lu Min, Chenyu Lu, Tianyi Zhang, Ruifen Chen, Ying Wu and Lingyun Zhu
    Citation: Biology Direct 2022 17:17
  28. Colorectal carcinoma is the second leading cause of cancer-related deaths, and indeed, rectal cancer accounting for approximately one third of newly diagnosed patients. Gold standard in the treatment of rectal...

    Authors: Andrea M. Guida, Bruno Sensi, Vincenzo Formica, Rolando M. D’Angelillo, Mario Roselli, Giovanna Del Vecchio Blanco, Piero Rossi, Gabriella T. Capolupo, Marco Caricato and Giuseppe S. Sica
    Citation: Biology Direct 2022 17:16
  29. This is a review of the current state of molecular profiling in gastrointestinal (GI) cancers and what to expect from this evolving field in the future. Individualized medicine is moving from broad panel testi...

    Authors: Reetu Mukherji, Chao Yin, Rumaisa Hameed, Ali Z. Alqahtani, Monika Kulasekaran, Aiwu R. He, Benjamin A. Weinberg, John L. Marshall, Marion L. Hartley and Marcus S. Noel
    Citation: Biology Direct 2022 17:15
  30. Rodents, such as mice, are vulnerable targets, and potential intermediate hosts, of SARS-CoV-2 variants of concern, including Alpha, Beta, Gamma, and Omicron. N501Y in the receptor-binding domain (RBD) of Spik...

    Authors: Yichao Zhu, Wenzhao Zhou, Zubiao Niu, Jiayi Sun, Zhengrong Zhang, Qinqin Li, You Zheng, Chenxi Wang, Lihua Gao and Qiang Sun
    Citation: Biology Direct 2022 17:14
  31. The evolution of spliceosomal introns has been widely studied among various eukaryotic groups. Researchers nearly reached the consensuses on the pattern and the mechanisms of intron losses and gains across euk...

    Authors: Ming-Yue Ma, Ji Xia, Kun-Xian Shu and Deng-Ke Niu
    Citation: Biology Direct 2022 17:13
  32. The RNA world hypothesis cannot address most of the questions of the origin of life without violating the continuity principle (small Darwinian steps without foresight and miracles). Moreover, the RNA world is...

    Authors: Besik Kankia
    Citation: Biology Direct 2022 17:12
  33. Prime numbers have been attracting the interest of scientists since the first formulation of Euclid’s theorem in 300 B.C. Nowadays, physicists and mathematicians continue to formulate new theorems about prime ...

    Authors: Maria Loconsole and Lucia Regolin
    Citation: Biology Direct 2022 17:11
  34. Historically, the molecular classification of colorectal cancer (CRC) was based on the global genomic status, which identified microsatellite instability in mismatch repair (MMR) deficient CRC, and chromosomal...

    Authors: Pasquale Sibilio, Francesca Belardinilli, Valerio Licursi, Paola Paci and Giuseppe Giannini
    Citation: Biology Direct 2022 17:10
  35. Migrasomes, released by migrating cells, belong to the heterogeneous world of extracellular vesicles (EVs). However, they can be distinguished from all other members of EVs by their size, biorigin and protein ...

    Authors: Arianna Di Daniele, Ylenia Antonucci and Silvia Campello
    Citation: Biology Direct 2022 17:8
  36. Bacteria and archaea produce an enormous diversity of modified peptides that are involved in various forms of inter-microbial conflicts or communication. A vast class of such peptides are Ribosomally synthesiz...

    Authors: Kira S. Makarova, Brittney Blackburne, Yuri I. Wolf, Anastasia Nikolskaya, Svetlana Karamycheva, Marlene Espinoza, Clifton E. Barry III, Carole A. Bewley and Eugene V. Koonin
    Citation: Biology Direct 2022 17:7
  37. Adaptation of the lipid metabolism participates  in cancer pathogenesis, facilitating energy storage and influencing cell fate and control of molecular signalling. The tumour suppressor protein p53 is a molecu...

    Authors: Alessio Butera, Micaela Roy, Carlotta Zampieri, Eleonora Mammarella, Emanuele Panatta, Gerry Melino, Angelo D’Alessandro and Ivano Amelio
    Citation: Biology Direct 2022 17:6
  38. In 2009, new EU legislation regulating advanced therapy medicinal products (ATMPs), consisting of gene therapy, tissue engineering and cell-based medicines, was introduced. Although less than 20 ATMPs were aut...

    Authors: Simon Hawlina, Helena H. Chowdhury, Tomaž Smrkolj and Robert Zorec
    Citation: Biology Direct 2022 17:5
  39. Hepatoblastoma (HB) is identified to be the most common liver malignancy which occurs in children. Long non-coding RNAs (lncRNAs) have been implicated in numerous biological processes and diseases, including H...

    Authors: Wei Zhang, Feng Liang, Qingfeng Li, Hong Sun, Fei Li, Zhibo Jiao and Jie Lei
    Citation: Biology Direct 2022 17:2
  40. Long non-coding RNAs (lncRNAs) have been reported to be vital factors to affect the expression of genes and proteins. Also, it has been proved that the abnormal expression or mutation of lncRNAs stands as a si...

    Authors: Change Qi, Jianwei Liu, Pengnv Guo, Yali Xu, Jing Hu and Xiaomei Han
    Citation: Biology Direct 2022 17:1
  41. A variety of hematopoietic abnormalities are commonly seen in human immunodeficiency virus-1 (HIV-1) infected individuals despite antiviral therapy, but the underlying mechanism remains elusive. Nef plays an i...

    Authors: Wei Zou, Juanjuan Xing, Shijie Zou, Mei Jiang, Xinping Chen, Qi Chen, Daozheng Liu, Xiangcheng Zhang and Xin Fu
    Citation: Biology Direct 2021 16:27
  42. Microorganisms evolved specific acclimation strategies to thrive in environments of high or fluctuating salinities. Here, salt acclimation in the model cyanobacterium Synechocystis sp. PCC 6803 was analyzed by in...

    Authors: Stephan Klähn, Stefan Mikkat, Matthias Riediger, Jens Georg, Wolfgang R. Hess and Martin Hagemann
    Citation: Biology Direct 2021 16:26
  43. Hepatocellular carcinoma (HCC) is one of the most common malignant tumors with high mortality worldwide. Accumulating researches have indicated that long non‑coding RNAs (lncRNAs) are involved in varies human ...

    Authors: ZhenYu Feng, ZhenYu Ye, JiaMing Xie, Wei Chen, Wei Li and ChunGen Xing
    Citation: Biology Direct 2021 16:24
  44. During oncogenesis, cells become unrestrictedly proliferative thereby altering the tissue homeostasis and resulting in subsequent hyperplasia. This process is paralleled by resumption of cell cycle, aberrant D...

    Authors: Julian M. Rozenberg, Svetlana Zvereva, Aleksandra Dalina, Igor Blatov, Ilya Zubarev, Daniil Luppov, Alexander Bessmertnyi, Alexander Romanishin, Lamak Alsoulaiman, Vadim Kumeiko, Alexander Kagansky, Gerry Melino, Carlo Ganini and Nikolai A. Barlev
    Citation: Biology Direct 2021 16:23
  45. Rab32 is a small GTPase associated with multiple organelles but is particularly enriched at the endoplasmic reticulum (ER). Here, it controls targeting to mitochondria-ER contacts (MERCs), thus influencing com...

    Authors: Maria Sol Herrera-Cruz, Megan C. Yap, Nasser Tahbaz, Keelie Phillips, Laurel Thomas, Gary Thomas and Thomas Simmen
    Citation: Biology Direct 2021 16:22
  46. Recently, overwhelming evidence supports that long noncoding RNAs (lncRNAs) play crucial roles in the occurrence and progression of tumors. However, the role and mechanism of lncRNA TFAP2A-AS1 in human gastric...

    Authors: Xin Zhao, Linlin Chen, Jingxun Wu, Jun You, Qingqi Hong and Feng Ye
    Citation: Biology Direct 2021 16:21

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