From: Inter-platform concordance of gene expression data for the prediction of chemical mode of action
Platform | Classifier | Overall Acc. % | Sensitivity, Specificity | ||
---|---|---|---|---|---|
PPARA | CAR/PXR | Control | |||
Microarray | Ensemble | 62 | 56,66 | 44,73 | 100,49 |
SVM | 50 | 33,60 | 44,54 | 83,39 | |
RF | 67 | 89,54 | 22,94 | 100,56 | |
PLS+LDA | 67 | 67,67 | 44,81 | 100,56 | |
PLS+RF | 54 | 44,60 | 33,67 | 100,39 | |
PCA+LDA | 12 | 33,0 | 0,20 | 0,17 | |
PCA+RF | 8 | 22,0 | 0,13 | 0,11 | |
RPART | 62 | 100,39 | 11,93 | 83,55 | |
RNASeq | Ensemble | 62 | 56,66 | 44,73 | 100,49 |
SVM | 54 | 44,60 | 33,67 | 100,39 | |
RF | 62 | 78,52 | 22,86 | 100,49 | |
PLS+LDA | 58 | 44,66 | 44,66 | 100,44 | |
PLS+RF | 50 | 44,54 | 22,67 | 100,33 | |
PCA+LDA | 33 | 33,33 | 0,53 | 83,16 | |
PCA+RF | 25 | 22,27 | 0,40 | 67,11 | |
RPART | 42 | 44,41 | 22,54 | 67,34 |