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Table 3 Comparison of Super3GL with RFsupertrees and CLANN version 3.0.2

From: Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios

Description Super3GL RFsupertrees CLANN
Artificial data (Additional file 3): 40 species, 1000 gene trees, 50932 leaves
Supertree S* Figure 7 Additional file 5 Additional file 6
Total cost of S* 97443 114028 158751
Cost of the second scenario 151630 173527 218958
Running time 21 m 10 m 847 m
Biological data (Additional file 4): 110 species, 3396 gene trees, 33470 leaves
Supertree S* Figure 8 Additional file 7 Additional file 8
Total cost of S* 210917 234880 234933
Cost of the second scenario 535524 660021 706826
Running time 14 m 107 m 2234 m
  1. The total cost of the supertree and the cost of the second evolutionary scenario are defined with c({G i }, S *) and formula (6), respectively. Individual event costs are as follows: c(dupl) = 3, c(loss) = 2, c(gain) = 12, c(gain_big) = 10, c(sleep) = 20, c(tr_with) = 17.6, c(tr_without) = 19.6.