Table 1 The complete genomes of 33 species (lower, middle and upper) used in this study

Fish (lower spp.)

 Callorhinchus milii

Elephant shark

IMCB_Cmil_1.0

GCF_018977255.1

 Danio rerio

Zebrafish

GRCz11

GCF_000002035.6

 Latimeria chalumnae

Coelacanth

LatCha1

GCF_000225785.1

 Oreochromis niloticus

Nile tilapia

O_niloticus_UMD_NMBU

GCF_001858045.2

 Oryzias latipes

Japanese medaka

ASM223467v1

GCF_002234675.1

 Takifugu rubripes

Fugu

fTakRub1.2

GCF_901000725.2

Amphibians (lower spp.)

 Xenopus tropicalis

 (Reference species)

Tropical clawed frog

UCB_Xtro_10.0

GCF_000004195.4

Reptilians (middle spp.)

 Anolis carolinensis

Anole lizard

AnoCar2.0

GCF_000090745.1

 Chrysemys picta bellii

Painted turtle

Chrysemys_picta_bellii-3.0.4

GCF_000241765.4

 Crocodylus porosus

Australian saltwater crocodile

CroPor_comp1

GCF_001723895.1

 Notechis scutatus

Mainland tiger snake

TS10Xv2-PRI

GCF_900518725.1

 Pelodiscus sinensis

Chinese softshell turtle

PelSin_1.0

GCF_000230535.1

 Pogona vitticeps

Central bearded dragon

pvi1.1

GCF_900067755.1

Birds (middle spp.)

 Anas platyrhynchos

Mallard

ZJU1.0

GCF_015476345.1

 Gallus gallus

Chicken

bGalGal1.pat.whiteleghornlayer.GRCg7w

GCF_016700215.2

 Meleagris gallopavo

Turkey

Turkey_5.1

GCF_000146605.3

 Taeniopygia guttata

Zebra Finch

bTaeGut1_v1.4.pri

GCF_003957565.2

Mammals

 Monotremata (middle spp.)

  Ornithorhynchus anatinus

Platypus

mOrnAna1.pri.v4

GCF_004115215.2

Marsupialia (middle spp.)

 Monodelphis domestica

Gray short-tailed opossum

MonDom5

GCF_000002295.2

 Sarcophilus harrisii

Tasmanian devil

mSarHar1.11

GCF_902635505.1

Placentalia (upper spp.)

 Bos taurus

Cow

ARS-UCD1.3

GCF_002263795.2

 Canis lupus familiaris

Dog

Dog10K_Boxer_Tasha

GCF_000002285.5

 Equus caballus

Horse

EquCab3.0

GCF_002863925.1

 Felis catus

Cat

F.catus_Fca126_mat1.0

GCF_018350175.1

 Gorilla gorilla

Gorilla

Kamilah_GGO_v0

GCF_008122165.1

 Heterocephalus glaber

Naked mole-rat

HetGla_female_1.0

GCF_000247695.1

 Homo sapiens

Human

GRCh38.p14

GCF_000001405.40

 Loxodonta africana

African bush elephant

Loxafr3.0

GCF_000001905.1

 Macaca mulatta

Macaque

Mmul_10

GCF_003339765.1

 Mesocricetus auratus

Golden Hamster

BCM_Maur_2.0

GCF_017639785.1

 Mus musculus

Mouse

GRCm39

GCF_000001635.27

 Pan troglodytes

Chimpanzee

Clint_PTRv2

GCF_002880755.1

 Sus scrofa

Pig

Sscrofa11.1

GCF_000003025.6