Fig. 5
From: Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations
Unrooted phylogenetic tree of SOD1, SOD2, SOD3, and SOD4 family proteins in the following jawed vertebrates: shark (Callorhinchus milii), bony fish (Danio rerio), frog (Xenopus tropicalis), lizard (Gekko japonicus), chicken (Gallus gallus) and human (Homo sapiens). Protein alignment and phylogenetic tree were built using MAFFT v7.511 [27] and IQ-TREE v2.2.0 [25, 44] tools for proteins under the following accessions: AFM87136.1 for Sod1Shark, NP_571369.1 for Sod1Fish, NP_001016252.1 for Sod1Frog, XP_015271096.1 for Sod1Lizard, NP_990395.2 for Sod1Chick, CAG46542.1 for SOD1Human, NP_001279581.1 for Sod2Shark, NP_956270.1 for Sod2Fish, NP_001005694.1 for Sod2Frog, XP_015268482.1 Sod2Lizard, NP_989542.2 for Sod2Chick, NP_001019636.1 for SOD2Human, AFM90279.1 for Sod3Shark, XP_001332758.1 for Sod3Fish, NP_001106630.1 for Sod3Frog, XP_015272245.1 for Sod3Lizard, XP_040525137.1 for Sod3Chick, CAG46651.1 for SOD3Human, XP_042193029.1 for Sod4Shark, XP_001343650.5 for Sod4Fish, and XP_017953150.2 for Sod4Frog. The branch support values were calculated using the ultrafast bootstrap approximation [43] with 1000 replicates