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Table 3 Records of the cosine similarity between the three mutational signatures extracted from each group from the MAF files and the three most similar COSMIC mutational signatures

From: An integrative in-silico analysis discloses a novel molecular subset of colorectal cancer possibly eligible for immune checkpoint immunotherapy

 

SBS best match

Aetiology

Cosine similarity

HM

   

 Signature 1

SBS44

Defective DNA mismatch repair

0.81

 Signature 2

SBS10b

Polymerase epsilon exonuclease domain mutations

0.78

 Signature 3

SBS6

Defective DNA mismatch repair

0.90

HM-like

   

 Signature 1

SBS1

Spontaneous or enzymatic deamination of 5-methylcytosine

0.94

 Signature 2

SBS30

Deficiency in base excision repair due to inactivating mutations in NTHL1

0.83

 Signature 3

SBS6

Defective DNA mismatch repair

0.93

Non-HM

   

 Signature 1

SBS1

Spontaneous or enzymatic deamination of 5-methylcytosine

0.96

 Signature 2

SBS40

Unknown

0.89

 Signature 3

SBS6

Defective DNA mismatch repair

0.77

  1. In the table are reported the best matches between the three mutational signatures extracted from the three groups and the COSMIC SBS Signatures database