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Fig. 5 | Biology Direct

Fig. 5

From: Thermodynamic and kinetic stability of the Josephin Domain closed arrangement: evidences from replica exchange molecular dynamics

Fig. 5

a Each snapshot, taken from the entire REMD trajectory at 310 K of the JD alone in water environment, is reported in figure in term Radius of Gyration and α3-α5 distance. The NMR snapshots derived from the JD models available in literature are colored in red (2AGA), blue (2DOS), black (1YZB) and green (2JRI). b Each snapshot, taken from the entire REMD trajectory at 310 K of the JD-Ubi complex (Ubiquitin located in the JD catalytic site), is reported in figure in term Radius of Gyration and α3-α5 distance. The NMR snapshots derived from the JD models available in literature are colored in red (2AGA), blue (2DOS), black (1YZB) and green (2JRI). c Each snapshot, taken from the entire REMD trajectory at 310 K of the JD-Ubi complex (Ubiquitin located in the JD binding site), is reported in figure in term Radius of Gyration and α3-α5 distance. The NMR snapshots derived from the JD models available in literature are colored in red (2AGA), blue (2DOS), black (1YZB) and green (2JRI)

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