Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria

Ramakrishnan, Gayatri; Jain, Abha; Chandra, Nagasuma; Srinivasan, Narayanaswamy

doi:10.1186/s13062-016-0130-9

Biology Direct

Table 2 Probable functional associations recognised for potential nucleotide cyclases

From: Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria

Sr. No.	UniProt ID	Gene name	Potential interacting partner	Pfam domain of the interacting partner [Pfam ID]	Gross function of the interacting partner
1.	R4MJ84	J113_17860	J113_17870	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
2.	R4MJ84	J113_17860	J113_17875	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
3.	J9WHW1	MIP_02960	MIP_02970	Periplasmic binding protein [PF13458]	Signal transduction, transport
4.	J9WHW1	MIP_02960	MIP_02959	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
5.	U5WU67	MKAN_22035	MKAN_22050	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
6.	B2HFJ8	MMAR_1384	MMAR_1388	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
7.	B2HFJ8	MMAR_1384	MMAR_1378	Helix-turn-helix domain [PF01381]	Regulatory processes
8.	P9WL98	MT2638	MT2640	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
9.	P9WL98	MT2638	MT2641	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
10.	A0PR68	MUL_2491	MUL_2488	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
11.	A0PR68	MUL_2491	MUL_2497	Helix-turn-helix domain [PF01381]	Regulatory processes
12.	L7V7X7	MULP_01555	MULP_01559	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
13.	L7V7X7	MULP_01555	MULP_01549	Helix-turn-helix domain [PF01381]	Regulatory processes
14.	H8ITY9	OCU_21180	OCU_21250	Periplasmic binding protein [PF13458]	Signal transduction, transport
15.	H8ITY9	OCU_21180	OCU_21170	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
16.	S4Z758	OEM_18810	OEM_18800	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
17.	P9WL99	Rv2561	Rv2564	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
18.	P9WL99	Rv2561	Rv2565	Cyclic nucleotide-binding domain [PF00027]	Signal transduction, regulatory processes
19.	I2ACB6	W7S_09825	W7S_09820	Alpha/beta hydrolase domain [PF12697]	Metabolic processes
20	W8FCI6	HSW_3800	HSW_3799	Phosphohydrolase [PF01966]	Nucleic acid metabolism, signal transduction

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ISSN: 1745-6150

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