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Table 2 Results of the various prediction methods for filtering TMPs on “filtering benchmark set”

From: The human transmembrane proteome

  MEMSAT-SVM Octopus Philius Phobius PRO Scampi-single Scampi-multi TMHMM CCTOP
TP 469 455 460 462 417 469 454 451 467
FP 51 40 24 20 28 26 40 21 21
TN 1371 1382 1398 1402 1394 1396 1382 1401 1401
FN 5 19 14 12 57 5 20 23 7
Sensitivity 0.99 0.96 0.97 0.97 0.88 0.99 0.96 0.95 0.99
Specificity 0.96 0.97 0.98 0.99 0.98 0.98 0.97 0.99 0.99
MCC 0.93 0.92 0.96 0.96 0.88 0.96 0.92 0.94 0.96
  1. See legend of Table 1