Table 2 Preferred residue pairs (*B) for binding with RNA
From: Structure based approach for understanding organism specific recognition of protein-RNA complexes
*B | Probability (%) | ||||
|---|---|---|---|---|---|
E. coli | H. sapiens | S. cerevisiae | Thermophiles | Archaea | |
Ala-Leu | 75.0 | 0.0 | 0.0 | 20.0 | 0.0 |
Ser-Asn | 100.0 | 100.0 | 37.5 | 75.0 | 0.0 |
Thr-Tyr | 100.0 | 66.7 | 0.0 | 75.0 | 100.0 |
Cys-His | 0.0 | 75.0 | 0.0 | 0.0 | 0.0 |
Gly-Thr | 100.0 | 75.0 | 66.7 | 37.5 | 100.0 |
Asn-Tyr | 0.0 | 100.0 | 100.0 | 0.0 | 0.0 |
Ile-Gln | 0.0 | 100.0 | 72.7 | 0.0 | 0.0 |
Ser-Arg | 0.0 | 40.0 | 100.0 | 100.0 | 57.1 |
Arg-Gly | 0.0 | 50.0 | 0.0 | 75.0 | 50.0 |
Ala-His | 0.0 | 0.0 | 0.0 | 80.0 | 75.0 |
Asn-Arg | 50.0 | 0.0 | 0.0 | 100.0 | 100.0 |
Asn-Lys | 0.0 | 25.0 | 25.0 | 100.0 | 75.0 |
Lys-Thr | 50.0 | 0.0 | 0.0 | 100.0 | 100.0 |
Gly-Arg | 30.0 | 50.0 | 0.0 | 38.5 | 71.4 |
Ser-Lys | 50.0 | 36.4 | 0.0 | 0.0 | 75.0 |
Thr-Pro | 0.0 | 100.0 | 0.0 | 50.0 | 75.0 |
Val-Lys | 100.0 | 33.3 | 50.0 | 50.0 | 75.0 |
Glu-Val | 0.0 | 0.0 | 0.0 | 16.7 | 80.0 |