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Table 5 Summary of FBA results

From: A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs

Human

Yeast

Reaction tested

Yeast 7.0 results

Knock-out growth

Explanation

P13716

P05373

Porphobilinogen synthesis

No FBA growth

Ferroheme b + Yeast 7.0 biomass equation

P22830

P16622

Protoheme ferrochelatase

No FBA growth

Ferroheme b + Yeast 7.0 biomass equation

P48637

Q08220

Glutathione synthesis

WT growth (μ = 0.1405 hr−1)

0 flux through reaction in WT (r_0485)

P49247

Q12189

Ribose-5-phosphate isomerization

No FBA growth

Phosphoribosyl-pyrophosphate block

Q96GX9

P47095

Methylthioribulose 1-phosphate dehydratase

Not determined

Gene not present in Yeast 7.0 model

Q9Y2Z4

P48527

Mitochondrial tyrosine-tRNA-ligase reaction

No FBA growth

Mitochondrial tRNA requirement + Yeast 7.0 biomass equation

  1. P47095 impact could not be modeled as the Yeast 7.0 model contains no corresponding gene.