Structural influence of gene networks on their inference: analysis of C3NET

Biology Direct

Table 2 Summary of the statistics for the inferability of motifs

	measure/motif type	1	2	3	4
Ecoli	#m	33	59	549	7
		0.518	0.378	0.657	0.232
		0.141	0.055	0.255	0.126
Yeast	#m	40	171	446	10
		0.592	0.360	0.592	0.190
		0.165	0.052	0.236	0.150
DAG	#m	109	16	94	2
		0.637	0.416	0.675	0.233
		0.178	0.087	0.217	0.204
RND	#m	161	110	89	4
		0.5062	0.4229	0.5549	0.0836
		0.143	0.083	0.163	0.045
SF	#m	1363	792	940	258
		0.4160	0.3681	0.4893	0.0592
		0.119	0.072	0.161	0.099

Summary of motif statistics for all considered networks. #m is the number of motifs, is the mean true reconstruction rate for a motif and σ (p) is its standard deviation. The sample size is for all cases 1000 except the Yeast network that has sample size 200. For all simulations the size of the ensemble was 300.

ISSN: 1745-6150