Table 1 Functional human p53 response elements occurring in repeats
From: Impact of Alu repeats on the evolution of human p53 binding sites
# | Gene name a | RE sequence | Spacer, bp | Repeat Assignment (CENSOR/RepeatMasker) c | Class/Family |
|---|---|---|---|---|---|
1 | GDF15 | CATCTTGCCC AGACTTGTCT | 0 | FLAM_C | SINE/Alu |
2 | BCL2L14 | AGCCAAGGCT GGTCTTGAAC | 0 | AluJr/Jo | SINE/Alu |
3 | CASP10, RE1 | GGGCATGGTG GGACATGCCT | 0 | AluJo/Jr | SINE/Alu |
4 | CASP10, RE2 | GGGCATGGTG GCACATGCCT | 0 | AluSp | SINE/Alu |
5 | BID | GGGCATGATG GTGCATGCCT | 0 | AluSg | SINE/Alu |
6 | TSC2, RE1 | GGGCATGGTG GCACATGCCT | 0 | AluSg | SINE/Alu |
7 | EphA2 | AGACATGCCT(S)CAACATGGTG | 3 | AluSz | SINE/Alu |
8 | HTT (HD) | CGCCATGTTG(S)AGGCTGGTCT | 3 | AluSq2 | SINE/Alu |
9 | CASP6 | AGGCAAGGAG(S)AGACAAGTCT | 4 | AluJr | SINE/Alu |
10 | BNIP3L | AAGCTAGTCT(S)GCGCATGCCT | 5 | AluJo/Jr | SINE/Alu |
11 | AIFM2, RE1 | AGACCAGCCT(S)TAGCGAGACC | 8 | AluJo | SINE/Alu |
12 | AIFM2, RE2 b | GGGCATGGCC(S)GCTCATGCCT | 10 | AluJo | SINE/Alu |
13 | TSC2, RE2 | AGGCTAGTCT(S)TGACGTGACC | 13 | AluJb | SINE/Alu |
14 | CCNK b | AAACTAGCTT(S)AGACATGCTG | 2 | MIRb | SINE/MIR |
15 | CASP10, RE3 | AAACTTGCTG(S)AATCTTGGCT | 5 | MIR | SINE/MIR |
16 | CTSD b | AACCTTGGTT TGCAAGAGGC | 0 | MER4D | LTR/ERV1 |
17 | MMP2 | AGACAAGCCT GAACTTGTCT | 0 | LTR88b | LTR/Gypsy |
18 | SCN3B | TGACTTGCTC TGCCTTGCCT | 0 | THE1B | LTR/ERVL-MaLR |
19 | TP53INP1 | GAACTTGGGG GAACATGTTT | 0 | MER21B | LTR/ERVL |
20 | TRIM22 | TGACATGTCT AGGCATGTAG | 0 | LTR10D | LTR/ERV1 |
21 | CRYZ | CTGCAAGTCC(S)AAACCTGTTT | 3 | THE1B | LTR/ERVL-MaLR |
22 | PLK2 | GGTCATGATT(S)TAACTTGCCT | 3 | MER34C | LTR/ERV1 |
23 | COL18A1 | TGACATGTGT GAGCATGTAT | 0 | (TG)n | Simple_repeat |
24 | SCARA3 | GGGCAAGCCC AGACAAGTTG | 0 | MER81 | DNA/hAT-Blackjac |