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Table 1 Pathway databases.

From: Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale

Pathway Database Access Primary data source Vendor/Developer Web site
Ingenuity Pathway Analyzer (IPA) Commercial Expert curation/data mining Ingenuity Systems, Inc. http://www.ingenuity.com
BKL TRANSPATH Commercial Expert curation BIOBASE http://www.biobase-international.com
BKL TRANSFAC Commercial Expert curation BIOBASE http://www.biobase-international.com
BioCarta Free Expert curation/scientific community contribution BioCarta, LLC http://www.biocarta.com
KEGG Free Expert curation Kanehisa Laboratories http://www.genome.jp/kegg
WikiPathways Free Expert curation/scientific community contribution BiGCaT Bioinformatics (University of Maastricht) and Conklin Lab (Gladstone Institutes, UCSF) http://www.wikipathways.org
Cell Signaling Technology pathways (CST) Free Expert curation/scientific community contribution Cell Signaling Technology, Inc. http://www.cellsignal.com
GeneSpring Commercial Expert curation/data mining Agilent Technologies, Inc. http://www.chem.agilent.com
Pathway Studio Commercial Data mining Ariadne Genomics, Inc. http://www.ariadnegenomics.com
MetaCore Commercial Expert curation GeneGo, Inc. http://www.genego.com