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Table 1 Pathway databases.
| Pathway Database | Access | Primary data source | Vendor/Developer | Web site |
|---|---|---|---|---|
| Ingenuity Pathway Analyzer (IPA) | Commercial | Expert curation/data mining | Ingenuity Systems, Inc. | http://www.ingenuity.com |
| BKL TRANSPATH | Commercial | Expert curation | BIOBASE | http://www.biobase-international.com |
| BKL TRANSFAC | Commercial | Expert curation | BIOBASE | http://www.biobase-international.com |
| BioCarta | Free | Expert curation/scientific community contribution | BioCarta, LLC | http://www.biocarta.com |
| KEGG | Free | Expert curation | Kanehisa Laboratories | http://www.genome.jp/kegg |
| WikiPathways | Free | Expert curation/scientific community contribution | BiGCaT Bioinformatics (University of Maastricht) and Conklin Lab (Gladstone Institutes, UCSF) | http://www.wikipathways.org |
| Cell Signaling Technology pathways (CST) | Free | Expert curation/scientific community contribution | Cell Signaling Technology, Inc. | http://www.cellsignal.com |
| GeneSpring | Commercial | Expert curation/data mining | Agilent Technologies, Inc. | http://www.chem.agilent.com |
| Pathway Studio | Commercial | Data mining | Ariadne Genomics, Inc. | http://www.ariadnegenomics.com |
| MetaCore | Commercial | Expert curation | GeneGo, Inc. | http://www.genego.com |
