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Table 5 KEGG pathways elucidated from the human spermatogenesis data.

From: On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation

KEGG pathway

Affymetrix

Illumina

 

ω

σ wtrep

σ μ

HSA00190 : Oxidative phosphorylation

✓

✓

✓

HSA00970 : Aminoacyl-tRNA synthetases

✓

✓

✓

HSA03010 : Ribosome

✓

✓

✓

HSA03050 : Proteosome

✓

✓

✓

HSA00010 : Glycolysis/Gluconeogenesis

 

✓

✓

HSA00030 : Pentose phosphate pathway

 

✓

✓

HSA00193 : ATP synthesis

 

✓

✓

HSA00530 : Aminosugars metabolism

 

✓

✓

HSA00640 : Propanoate metabolism

 

✓

✓

HSA03020 : RNA polymerase

 

✓

✓

HSA03060 : Protein export

 

✓

✓

HSA04110 : Cell cycle

 

✓

✓

MMU03010 : Ribosome

✓

✓

 

HSA04120 : Ubiquitin mediated proteolysis

✓

  

HSA00020 : Citrate cycle (TCA cycle)

✓

  

HSA00240 : Pyrimidine metabolism

 

✓

 

HSA00251 : Glutamate metabolism

 

✓

 

HSA00510 : N-glycan biosynthesis

 

✓

 

HSA03022 : Basal transcription factors

 

✓

 

HSA04520 : Adherens junction

 

✓

 

HSA04530 : Tight junction

 

✓

 

HSA00620 : Pyruvate metabolism

  

✓

  1. The first column indicates the name of the KEGG pathways. Only KEGG pathways with EASE score ≤ 0.05 and count ≥ 5 are included. The second column indicates KEGG pathways found by Affymetrix. The third and fourth columns indicate the KEGG pathways found by using σ μ and σ wtrep respectively. Cutoff criteria of EASE score ≤ 0.05 and count ≥ 5 were applied.