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Table 5 Time to compute alignments for the full set of human mRNA sequences. The timing is based on a single instance running on Intel Xeon 2.33 GHz/8 GB Linux box.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  Sim4 Spidey BLAT GMAP SPA Splign
CPU hours 856 698 8 12 2448 49