Table 16 Compartmentization based on local alignments computed using different methods. N1 is the number of mRNA sequences with 75% or higher coverage by alignments to any single chromosome or unplaced scaffold.N2 is the number of mRNA sequences with 75% or higher coverage by high-identity alignments to any single chromosome or unplaced scaffold. N3 is the number of sequences for which at least one compartment was identified with the minimum compartment identity of 75%. The computing time was collected on Intel Xeon 2.33 GHz/8 GB Linux box.
From: Splign: algorithms for computing spliced alignments with identification of paralogs
| Â | Â | MB/RM | MB/WM | Compart |
|---|---|---|---|---|
Human 36.3 | N 1 | 232342 (94.95%) | 234565 (95.86%) | 238851 (97.61%) |
| Â | N 2 | 224054 (91.56%) | 226293 (92.48%) | 229101 (93.63%) |
| Â | N 3 | 231939 (94.79%) | 234207 (95.71%) | 236928 (96.82%) |
| Â | time (min) | 179 | 70 | 32 |
Mouse 37.1 | N 1 | 227831 (98.44%) | 228681 (95.17%) | 232245 (96.65%) |
| Â | N 2 | 222746 (92.70%) | 223704 (93.09%) | 226107 (94.09%) |
| Â | N 3 | 226964 (94.45%) | 227895 (94.84%) | 230478 (95.91%) |
| Â | time (min) | 372 | 59 | 29 |