From: Splign: algorithms for computing spliced alignments with identification of paralogs
 |  | RepeatMasker | WindowMasker | Compart |
---|---|---|---|---|
Human | Q1(%) | 46.79 | 28.81 | 17.68 |
 | Q2(%) | 31.03 | 12.23 | 5.41 |
 | time (min) | 6077 | 131 | 7 |
Mouse | Q1(%) | 40.55 | 28.61 | 17.71 |
 | Q2(%) | 25.24 | 12.41 | 5.46 |
 | time (min) | 5955 | 117 | 6 |