pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

Biology Direct

Table 1 Results of the self-consistency test

Score	Profile	T _j	Access.	Site	Sequence	Reference
-0.381	1.114	T₁,T₂	P02687	10	---------AAQKRPSQRS KYLASASTMDHARHGFLPRHRDT	Kishimoto et al. 1985 [37]
-1.338	0.495	T₁-T₄	P19112	356	SRPSLPLPQSRARESPVHS ICDELF-----------------	Ekdahl 1987 [38]
-1.368	0.069	many	P24385	197	RKHAQTFVALCATDVKFIS NPPSMVAAGSVVAAVQGLNLRSP	Sewing & Müller 1994 [39]

Phosphorylated sites from the learning set that are not predicted by the normally parameterized pkaPS predictor (false-negatives in the self-consistency test). The listed penalties T_jare the terms which make the highest contributions to the negative overall scores.

ISSN: 1745-6150