Skip to main content

Table 1 Statistics of cynomolgus macaque genome assemblies

From: Long-read assembly of major histocompatibility complex and killer cell immunoglobulin-like receptor genome regions in cynomolgus macaque

 

Hifiasm

Wtdbg2

Total number (#)

2,468

1,397

Total length (bp)

3,650,970,991

2,729,663,640

Gap(bp)

0

0

Average length (bp)

1,479,324

1,953,947

N50 length (bp)

12,142,537

13,770,693

N90 length (bp)

1,808,563

2,371,347

Maximum length (bp)

56,411,848

50,183,256

Minimum length (bp)

11,420

1,385

GC content

41.16%

40.99%

  1. Hifiasm (v0.12; -r1- × 0.9-y0.2) and Wtdbg2 (v2.3; -p23-E2S4-s0.05-L5000-X50;-j1500) software tools were used for de novo assembly with the generated HiFi reads