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Table 3 Recall estimation versus TICA with respect to testing dataset TS

From: NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information

Actual class TICA (p = 0.2) TICA (p = 0.3) NAUTICA
  NINT INT Recall NINT INT Recall NINT INT Recall
NINT 18 33 35% 18 33 35% 21 30 41%
COMP 4 4 50% 3 5 63% 3 5 63%
COOP 25 38 60% 22 41 65% 38 48 76%
NINTa 3868 2497 61% 3868 2497 61% 5259 1106 83%
COMPa 69 54 44% 36 87 71% 68 55 44%
COOPa 248 443 64% 186 500 73% 154 537 77%
  1. Note: COOP and COMP predictions from NAUTICA were collapsed into the general ``interaction” (INT) category for the comparison. Upper: no calibration. Lower: with calibration (also marked with a). Calibration is done with the same procedure as the general NAUTICA recall analysis (Table 2)