Skip to main content

Table 2 Recall estimates on testing set TS

From: NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information

Actual class

P_NINT

P_COMP

P_COOP

Recall

NINT

21

17

13

41%

COMP

3

3

2

37%

COOP

15

2

46

73%

NINTa

5292

928

145

83%

COMPa

68

49

6

39%

COOPa

154

17

520

75%

  1. Note: Upper - no calibration. Lower - with calibration for recall (also marked with a). The calibration is described in Recall calibration and evaluation and is performed by substituting to each prediction (whether correct or not) its weight. The weight is defined as the ratio between the number of interactions that have the same N_12 as that prediction and the same count done for the N12 value that has the least interactions. Note that specificity cannot be calibrated without some additional assumptions