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Table 2 27 high-quality genome drafts from SPAdes/MetaBAT

From: Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

Sample/Bin Compl. Cont. Closest Species Phenotypic traits Predicted Proteins iRep AAI ANI
Grip5941 #1 100 0.11 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2341 1.41 97.28 99.89
Grip6354 #1 100 0.55 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2400 1.45 97.30 99.83
Grip6358 #1 98.9 1.23 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2354 1.38 97.34 99.91
Grip6361 #3 98.93 2.34 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2507 n/d 96.05 99.97
Pole5898 #1 99.34 0.55 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2357 1.42 96.67 99.75
Pole6380 #1 99.12 4.23 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2595 n/d 97.07 99.55
Sb5919 #4 99.01 0.66 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2349 1.40 97.46 99.81
Sb5948#2 100 0.13 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2380 1.48 97.03 99.56
Ts5934#1 99.78 1.75 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2441 n/d 96.85 99.76
Ts5963 #1 99.56 0 Propionibacterium acnes 1, 2, 13, 20, 23 2366 1.38 97.39 99.89
Ts6363 #1 100 0.11 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2390 1.34 96.88 99.75
Ts6367 #1 100 0 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2351 1.42 97.12 99.83
Ts6375 #2 99.34 1.86 Propionibacterium acnes 1, 2, 13, 20, 23 2382 1.39 96.92 99.93
Ts5059 #2 100 0 Propionibacterium acnes 1, 2, 13, 15, 20, 23 2313 1.36 97.47 99.86
Metal8994 #2 99.36 0.14 Pseudomonas stutzeri 1, 2, 6, 8–12, 14–18, 21, 23 4151 n/d 95.88 98.03
Metal8994 #5 99.07 0.63 Enterobacter cloacae 1–3, 6, 7, 9–12, 15, 16, 19, 20, 23, 24 4405 n/d 93.51 92.02
Metal9078 #4 98.77 2.9 Pseudomonas stutzeri 1, 2, 4, 6, 8–12, 14–16, 23 4160 n/d 84.17 84.88
Metal9087 #2 100 0.65 Pseudomonas xanthomarina 1, 6, 8–12, 14–16, 23 4048 n/d 86.97 84.58
Metal9150 #4 99.3 1.4 Clostridium difficile 2, 9, 11, 13–16, 22, 23, 2818 n/d 78.26 77.02
Metal9150 #5 99.57 0.42 Stenotrophomonas rhizophila 1, 4, 5, 7, 9, 10, 12, 14, 15, 19, 20, 23 3937 n/d 86.37 84.58
Metal9150 #7 100 0.26 Leoconostoc mesenteroides 1–3, 13, 23 1785 n/d 97.24 99.65
Metal9957 #3 94.52 0.27 Pseudomonas stutzeri n/d 3954 1.51 96.68 98.09
Metal0032 #2 99.83 0.16 Stenotrophomonas maltophilia 1, 5–10, 14, 15, 19, 20, 23 4069 n/d 76.15 90.47
MePl9373 #2 99.59 0.2 Pseudomonas stutzeri 1, 2, 4, 6, 8–12, 14–16, 18, 23 4157 n/d 84.25 85.30
MePl9832 #7 98.59 3.76 Gottschalkia acidurici 2, 9, 12–16, 23 4227 n/d 74.76 85.30
Wood9044 #4 99.47 0.33 Enterobacter hormaechei 1–3, 6, 9–12, 15, 16, 19, 20, 24 4352 n/d 97.63 99.04
Wood9200 #3 100 0 Weeksella virosa 1, 9, 14, 19, 20, 23 3323 n/d 72.79 74.08
  1. All high-quality genome draft bins from SPAdes/MetaBAT are listed. Sample names are abbreviations of surface names (Sb = Seat backs, Ts = Touchscreen, MePl = Metal/Plastic) and the last four digits of respective SRR ID’s (Additional file 3: Table S2). n/d = values could not be determined as one or more filters failed for calculation. Present number for phenotypic trains indicates a trait being predicted as present (1: aerobe; 2: anaerobe; 3: facultative anaerobe; 4: Type III secretion system; 5: Type IV secretion system; 6: Type VI secretion system; 7: alkane degradation; 8: benzoate degradation via hydroxylation; 9: butyrate producing; 10: chitine degradation; 11: CO assimilation; 12: trimethylamine production via choline; 13: stains gram-positive; 14: bile acid degradation; 15: H2 gas production; 16: self-propelled motion; 17: N2 fixation; 18: fatty acid degradation; 19: hydrolyzing phosphonate; 20: recycles organic phosphorus; 21: oxidizes thiosulfate; 22: produces endospores for persistence; 23: urea degradation; 24: reduces various alpha,beta-unsaturated and nitro compounds)