From: Assessment of urban microbiome assemblies with the help of targeted in silico gold standards
Sample/Bin | Compl. | Cont. | Closest Species | Phenotypic traits | Predicted Proteins | iRep | AAI | ANI |
---|---|---|---|---|---|---|---|---|
Grip5941 #1 | 100 | 0.11 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2341 | 1.41 | 97.28 | 99.89 |
Grip6354 #1 | 100 | 0.55 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2400 | 1.45 | 97.30 | 99.83 |
Grip6358 #1 | 98.9 | 1.23 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2354 | 1.38 | 97.34 | 99.91 |
Grip6361 #3 | 98.93 | 2.34 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2507 | n/d | 96.05 | 99.97 |
Pole5898 #1 | 99.34 | 0.55 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2357 | 1.42 | 96.67 | 99.75 |
Pole6380 #1 | 99.12 | 4.23 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2595 | n/d | 97.07 | 99.55 |
Sb5919 #4 | 99.01 | 0.66 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2349 | 1.40 | 97.46 | 99.81 |
Sb5948#2 | 100 | 0.13 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2380 | 1.48 | 97.03 | 99.56 |
Ts5934#1 | 99.78 | 1.75 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2441 | n/d | 96.85 | 99.76 |
Ts5963 #1 | 99.56 | 0 | Propionibacterium acnes | 1, 2, 13, 20, 23 | 2366 | 1.38 | 97.39 | 99.89 |
Ts6363 #1 | 100 | 0.11 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2390 | 1.34 | 96.88 | 99.75 |
Ts6367 #1 | 100 | 0 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2351 | 1.42 | 97.12 | 99.83 |
Ts6375 #2 | 99.34 | 1.86 | Propionibacterium acnes | 1, 2, 13, 20, 23 | 2382 | 1.39 | 96.92 | 99.93 |
Ts5059 #2 | 100 | 0 | Propionibacterium acnes | 1, 2, 13, 15, 20, 23 | 2313 | 1.36 | 97.47 | 99.86 |
Metal8994 #2 | 99.36 | 0.14 | Pseudomonas stutzeri | 1, 2, 6, 8–12, 14–18, 21, 23 | 4151 | n/d | 95.88 | 98.03 |
Metal8994 #5 | 99.07 | 0.63 | Enterobacter cloacae | 1–3, 6, 7, 9–12, 15, 16, 19, 20, 23, 24 | 4405 | n/d | 93.51 | 92.02 |
Metal9078 #4 | 98.77 | 2.9 | Pseudomonas stutzeri | 1, 2, 4, 6, 8–12, 14–16, 23 | 4160 | n/d | 84.17 | 84.88 |
Metal9087 #2 | 100 | 0.65 | Pseudomonas xanthomarina | 1, 6, 8–12, 14–16, 23 | 4048 | n/d | 86.97 | 84.58 |
Metal9150 #4 | 99.3 | 1.4 | Clostridium difficile | 2, 9, 11, 13–16, 22, 23, | 2818 | n/d | 78.26 | 77.02 |
Metal9150 #5 | 99.57 | 0.42 | Stenotrophomonas rhizophila | 1, 4, 5, 7, 9, 10, 12, 14, 15, 19, 20, 23 | 3937 | n/d | 86.37 | 84.58 |
Metal9150 #7 | 100 | 0.26 | Leoconostoc mesenteroides | 1–3, 13, 23 | 1785 | n/d | 97.24 | 99.65 |
Metal9957 #3 | 94.52 | 0.27 | Pseudomonas stutzeri | n/d | 3954 | 1.51 | 96.68 | 98.09 |
Metal0032 #2 | 99.83 | 0.16 | Stenotrophomonas maltophilia | 1, 5–10, 14, 15, 19, 20, 23 | 4069 | n/d | 76.15 | 90.47 |
MePl9373 #2 | 99.59 | 0.2 | Pseudomonas stutzeri | 1, 2, 4, 6, 8–12, 14–16, 18, 23 | 4157 | n/d | 84.25 | 85.30 |
MePl9832 #7 | 98.59 | 3.76 | Gottschalkia acidurici | 2, 9, 12–16, 23 | 4227 | n/d | 74.76 | 85.30 |
Wood9044 #4 | 99.47 | 0.33 | Enterobacter hormaechei | 1–3, 6, 9–12, 15, 16, 19, 20, 24 | 4352 | n/d | 97.63 | 99.04 |
Wood9200 #3 | 100 | 0 | Weeksella virosa | 1, 9, 14, 19, 20, 23 | 3323 | n/d | 72.79 | 74.08 |