Table 7 Model quality measured with MCC coefficient for the CNV-145 data set

Stage 1

T-test

0.566

-

-

-

IG-1D

0.569

0.646

0.642

0.646

IG-2D

0.460

0.484

0.491

0.492

T-test + lasso

0.568

-

-

-

Stage 2

T-test

0.534

-

-

-

0.545

-

-

-

IG-1D

0.544

0.624

0.617

0.615

0.551

0.635

0.632

0.627

IG-2D

0.443

0.470

0.484

0.484

0.452

0.481

0.493

0.491

T-test + lasso

0.537

-

-

-

0.554

-

-

-

Stage 3

T-test

0.476

-

-

-

0.189

-

-

-

IG-1D

0.575

0.582

0.583

0.582

0.248

0.257

0.258

0.260

IG-2D

0.502

0.511

0.514

0.514

0.279

0.301

0.308

0.306

T-test + lasso

0.510

-

-

-

0.193

-

-

-