From: Profiling microbial strains in urban environments using metagenomic sequencing data
Species | Known | Novel | Â | Â | ||
---|---|---|---|---|---|---|
 | Number of samples | Number of STs | Number of samples | Number of STs | Prevalence across dataset | Most prevalent ST (samples) |
Acinetobacter baumannii | 69 | 22 | 123 | 117 | 11.90% | ST71 (20) |
Enterobacter cloacae | 63 | 39 | 89 | 85 | 9.42% | ST50 (7) |
Stenotrophomonas maltophilia | 15 | 12 | 98 | 90 | 7.00% | ST100009 (3) |
Cronobacter spp. | 2 | 2 | 66 | 56 | 4.21% | Â |
Klebsiella pneumoniae | 13 | 12 | 38 | 38 | 3.16% | Â |
Bacillus cereus | 15 | 11 | 17 | 17 | 1.98% | Â |
Klebsiella oxytoca | 12 | 5 | 18 | 18 | 1.86% | ST44 (8) |
Achromobacter spp. | 2 | 2 | 27 | 27 | 1.80% | Â |
Enrerococcus faecalis | 6 | 5 | 18 | 18 | 1.49% | Â |
Propionibacterium acnes | 4 | 2 | 18 | 18 | 1.36% | Â |
Escherihia coli | 3 | 2 | 16 | 15 | 1.18% | Â |
Pseudomonas fluorescens | 1 | 1 | 7 | 6 | 0.50% | Â |
Pseudomonas aeruginosa | 5 | 1 | 1 | 4 | 0.37% | Â |
Clostridium botulinum | 1 | 5 | 5 | 1 | 0.37% | Â |
Total | 211 | 121 | 541 | 510 | Â | Â |