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Table 1 Number of differentially expressed genes (DEG) with and without domains for considered datasets and mappers

From: Genes sharing the protein family domain decrease the performance of classification with RNA-seq genomic signatures

Mapers No of DEG Datasets
   GSE22260 GSE50760 GSE87340
Hisat Total 359 7182 11048
  With/no domains 245 / 114 5141 / 2041 7839 / 3209
Star Total 430 7264 11619
  With/no domains 271 / 159 5165 / 2055 7985 / 3634
Subread Total 579 7918 11402
  With/no domains 369 / 210 5350 / 2568 8029 / 3373
  1. For each dataset and mapper the number of total number of DEG, as well as number of DEG with and without domains was calculated. In each case there were more DEG with domains