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Fig. 3 | Biology Direct

Fig. 3

From: COGNAT: a web server for comparative analysis of genomic neighborhoods

Fig. 3

Genomic neighborhoods for the clades of predicted proteins belonging to the COG1009 (NADH:ubiquinone oxidoreductase of type 1, NuoL subunit, and Na+/H+ antiporter, MnhA subunit). Typical genomic neighborhoods are shown for the top and bottom clades of the tree that contain sequences of well-studied proteins. A set of 177 proteins belonging to a reduced but representative set of 124 genomes was aligned with the MUSCLE software [5]. The multiple alignment was verified manually and conserved blocks (total 238 positions) were used for the phylogenetic tree construction with the MEGA 7 software [17]. Bootstrap support values calculated from 100 iterations are shown on the branches. Red arrows correspond to the proteins that belong to COG3002

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