EMQIT: a machine learning approach for energy based PWM matrix quality improvement

Biology Direct

Table 1 The AUC values estimated for all analysed matrices

TFs	Improved 3DTF matrix	Original 3DTF matrix	TRANSFAC matrix
The P53 tetramer	0.900	0.534	0.757
ERα	0.792	0.605	0.734
GABP	0.906	0.577	0.739
p50p50	0.934	0.683	0.788
p50p65	0.887	0.680	0.767
HSF1	0.908	0.702	0.758

ISSN: 1745-6150