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Table 1 The four genes analyzed in this study

From: Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

Gene

# of residues

Deep mutational scanning

Alignment details

Yeast Gal4 DNA binding domain

64

[31]

17 sequences with 87% and 59% avg and min pairwise protein identity

β-lactamase

263

[14]

85 sequences with 82% and 63% avg and min pairwise protein identity

Influenza nucleoprotein (NP)

498

[32]

180 sequences with 95% and 90% avg and min pairwise protein identity

Influenza H1 hemagglutinin (HA)

564

[33]

111 sequences with 95% and 87% avg and min pairwise protein identity