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Fig. 3 | Biology Direct

Fig. 3

From: Sensitivity, specificity, and reproducibility of RNA-Seq differential expression calls

Fig. 3

Inter-site differential expression calls. We identify genes differentially expressed between samples from alternative sites. The y-axis [DEG] shows the number of differential expression calls (q<5%). Violin plots summarize the results for all possible pairs of alternative sites. Each panel shows data for a particular method of differential expression calling. Plots for various methods of expression estimation are shown along the x-axis. Colour indicates the samples compared: A-vs-C (cyan), A-vs-A (magenta), and C-vs-C. High counts in same–same comparisons reflect a lack of specificity

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