From: Estimation of ribosome profiling performance and reproducibility at various levels of resolution
Organism | Dataset | Condition | Treatment | Replicate | Type | Accession |
---|---|---|---|---|---|---|
C. elegans | Stadler_2011 [26] | L1 | post CHX | rep1 rep2 | biological | SRR405089 SRR405091-2 |
 | Stadler_2012 [44] | L1 | post CHX | rep1 rep2 rep3 rep4 | biological | SRR522871 SRR522872 SRR522896 SRR522897 |
D. rerio | Bazzini_2012 [14] | WT, 2hpf WT, 6hpf | pre/post CHX | rep1 rep2 rep1 rep2 | biological | SRR392998-9 SRR393000-1 SRR393006-7 SRR393008-9 |
E. coli | Li_2012 [36] | MOPS | post GMPPNP+ Chloramphenicol | rep1 rep2 | biological | SRR407274-5 SRR407276-7 |
 | Oh_2011 [23] | DSP | pre/post Chloramphenicol rapid filtration | rep1 rep2 rep3 | biological | SRR364364 SRR364366 SRR364368 |
H. sapiens | Stadler_2011 [26] | HeLa, CHX | post CHX | rep1 rep2 | technical | SRR407637 SRR407638 |
 | Lee_2012 [54] | HEK293T, CHX | pre/post CHX | rep1 rep2 | technical | SRR618770 SRR618771 |
 | Liu_2013 [45] | HeLa-tTA, K71M | pre/post CHX | rep1 rep2 | biological | SRR619099 SRR619100 |
 | Stumpf_2013 [50] | HeLa, G1 | pre/post CHX | rep1 rep2 | biological | SRR970490 SRR970538 |
 | Andreev_2015 [48] | HEK293T, control | post CHX | rep1 rep2 | biological | SRR1173905 SRR1173909-10 |
M. musculus | Inoglia_2011 [38] | mESC, noLIF-36Â h mESC, yesLIF | pre/post CHX | rep1 rep2 rep1 rep2 rep3 | biological | SRR315620-2 SRR315623 SRR315601-2 SRR315624-6 SRR315627 |
S. cerevisiae | Ingolia_2009 [10] | YPD | pre/post CHX | rep1 rep2 | biological | SRR014374-6 SRR014377-81 |
 | Brar_2012 [12] | meiotic | pre/post CHX | rep1 rep2 | biological | SRR387904 SRR387905 |
 | Artieri_2014 [43] | YPD, mixed \w S. paradoxus | pre/post CHX | rep1 rep2 | biological | SRR1040415 SRR1040423, SRR1040427 |
 | McManus_2014 [49] | YPD | pre/post CHX | rep1 rep2 | biological | SRR948553 SRR948555 |