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Table 2 Polymorphisms found in the genomes and transcripts of A. thaliana accessions Bur0 and Tsu1

From: Altools: a user friendly NGS data analyser

 

Bur0

Tsu1

# Homozygous SNPs

125,234

107,257

# Heterozygous SNPs

7895

7203

# Homozygous indels

3271

2514

# Heterozygous indels

2072

1677

 

CDS

0.32

0.28

SNP frequency

3utr

0.36

0.29

 

5utr

0.36

0.29

 

CDS

0.003

0.003

Indel frequency

3utr

0.059

0.045

 

5utr

0.063

0.049

# Amino acid mutations

49,369

43,215

# Premature stop codons

573

469

# Lost stop codons

114

101