|
dgwsim generated polymorphisms
|
121,388
|
122,074
|
121,368
|
121,540
|
121,638
|
|
dgwsim generated SNPs
|
107,054
|
107,411
|
106,766
|
107,372
|
107,277
|
|
dgwsim generated indels
|
14,334
|
14,663
|
14,602
|
14,168
|
14,361
|
|
Altools total called SNPs
|
35,714
|
81,647
|
102,493
|
105,164
|
105,580
|
|
Altools correctly called SNPs
|
35,650
|
81,482
|
102,274
|
104,910
|
105,243
|
|
Altools false positive SNPs
|
64
|
165
|
219
|
254
|
337
|
|
Altools total called indels
|
3049
|
8307
|
11,134
|
11,542
|
11,657
|
|
Altools correctly called indels
|
3040
|
8280
|
11,112
|
11,503
|
11,621
|
|
Altools false positive indels
|
9
|
27
|
22
|
39
|
36
|
|
PPV
| | | | | |
|
SNPs
|
1.00
|
1.00
|
1.00
|
1.00
|
1.00
|
|
Indels
|
0.33
|
0.76
|
0.96
|
0.98
|
0.98
|
|
Sensitivity
| | | | | |
|
SNPs
|
1.00
|
1.00
|
1.00
|
1.00
|
1.00
|
|
Indels
|
0.21
|
0.56
|
0.76
|
0.81
|
0.81
|
