Table 3 The performance of different methods on peptides in CyclicPep dataset. All models were subjected to 100 ps molecular dynamics simulations in vacuum environment

 1n0c

10

2.98

2.31

2.30

1.83

0.99

0.83

 1n0a

11

3.61

3.92

0.50

0.41

1.09

1.21

 1etl

12

2.07

2.10

3.14

2.47

2.51

2.46

 1im1

12

3.76

3.86

1.85

1.90

2.39

2.44

 1gnb

13

3.45

3.06

5.18

5.13

3.84

3.86

 1hje

13

3.56

3.60

3.64

3.64

3.85

2.47

 1im7

13

4.33

3.51

4.07

3.74

3.73

3.55

 1xgb

13

3.91

3.44

3.59

3.59

2.51

2.62

 2i28

13

3.29

3.23

1.16

0.79

4.66

4.24

 1b45

14

2.93

1.97

3.74

2.17

3.98

2.36

 1jbl

14

4.26

3.36

2.10

2.05

4.01

3.13

 1r8t

15

3.22

2.97

3.84

3.70

2.33

2.08

 1kwd

16

2.24

2.58

2.76

2.18

4.58

4.53

 1mii

16

4.35

4.36

0.86

0.88

2.69

2.46

 2efz

16

5.37

5.27

4.54

3.75

3.40

3.31

 1nim

17

4.35

4.40

3.68

3.53

5.54

5.37

 1ien

19

5.01

4.70

2.54

2.44

2.49

3.46

 1x7k

19

4.79

4.73

5.03

4.92

4.43

4.28

 1kcn

21

4.49

4.41

6.17

5.74

6.58

6.24

 1rpc

21

6.34

6.36

5.86

5.85

6.03

5.96

 1ter

21

7.39

7.26

5.57

5.44

2.56

2.64

 1v6r

21

7.08

7.03

5.91

5.88

5.69

5.85

 1 hp9

22

5.35

5.38

2.76

2.70

2.40

2.03

 2ajw

22

4.88

4.76

0.99

0.83

2.81

2.64

 1oig

24

6.82

6.69

5.56

5.59

6.16

6.14

 1orx

24

7.61

7.41

6.97

6.81

5.85

5.85

 1sp7

24

6.40

6.46

6.47

5.60

5.98

3.80

 2oq9

24

6.28

5.76

9.73

9.56

6.36

5.90

 1wqc

26

6.57

5.03

1.19

1.12

2.10

2.07

 1v5a

28

6.28

6.17

5.06

4.84

3.93

3.76

 1wm8

28

7.78

7.87

6.87

7.07

7.89

7.69

 2it7

28

7.05

7.06

5.59

5.43

4.40

4.25

 2nx7

28

5.65

5.68

6.40

6.31

4.61

4.32

 1mmc

30

7.76

6.01

5.97

5.61

5.80

5.70

Average

5.04

4.78

4.16

3.93

4.06

3.81