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Table 2 Types of modifications available in PEPstrMOD and availability of these modifications in other methods

From: PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues

Prediction methods

Natural peptides structure prediction

Peptide modifications

  

N and C terminal

L/D

Cyclization

Non-natural residues covered

PTM

Availability

PEPstrMOD

Y

Y

Y

Y

210a +147b

32c

Web-service

PEP-FOLD (2012)

Y

N

N

Y

N

N

Web-service

PepLook −2011

Y

N

Y

Y

~19

N

N

Narzisi et al. (2010)

Y

N

N

N

N

N

N

PEP-FOLD (2009)

Y

N

N

N

N

N

Web-service

PepLook −2009

Y

N

N

N

N

N

N

Gps −2008

Y

N

N

N

N

N

N

PEPstr −2007

Y

N

N

N

N

N

Web-service

Geocore −1999

Y

N

N

N

N

N

N

  1. Y: Available
  2. N: Not-Available
  3. alist of non-natural residues from SwissSideChain library
  4. blist of non-natural residues from FFNCAA library
  5. clist of non-natural residues from FFPTM library