From: Microarray experiments and factors which affect their reliability
Group | Type | Name | Description |
---|---|---|---|
1 | Housekeeping genes | AFFX-HSAC07/X00351 | ACTB - β-actin gene responsible for the structure of the cell |
AFFX-HUMGAPDH/M33197 | GAPDH – enzyme which takes part in glycolysis | ||
AFFX-HUMISGF3A/M97935 | STAT1 – transcription factor | ||
2 | Ribosomal RNA | AFFX-HUMRGE/M10098 | Gene coding for 18S rRNA subunit |
AFFX-M27830 | Gene coding for 28S rRNA subunit | ||
AFFX-r2-Hs18SrRNA | Gene coding for 18S rRNA subunit - version 2 | ||
AFFX-r2-Hs28SrRNA | Gene coding for 28S rRNA subunit - version 2 | ||
3 | Amplification control (Poly-A spike) | AFFX-DapX / AFFX-r2-Bs-dap | Dap gene of B.Subtilis bacteria - proportions 1:6,667 |
AFFX-ThrX / AFFX-r2-Bs-thr | Thr gene of B.Subtilis bacteria - proportions 1:25,000 | ||
AFFX-PheX / AFFX-r2-Bs-phe | Phe gene of B.Subtilis bacteria - proportions 1:50:000 | ||
AFFX-LysX / AFFX-r2-Bs-lys | Lys gene of B.Subtilis bacteria - proportions 1:100,000 | ||
4 | Hybridization control (Bacterial spike) | AFFX-BioB / AFFX-r2-Ec-bioB | BioB gene of E.Coli bacteria – quantity 1.5 pM |
AFFX-BioC / AFFX-r2-Ec-bioC | BioC gene of E.Coli bacteria – quantity 5 pM | ||
AFFX-BioDn / AFFX-r2-Ec-bioD | BioD gene of E.Coli bacteria – quantity 25 pM | ||
AFFX-CreX / AFFX-r2-P1-cre | Cre gene of P1 bacteriophage – quantity 100 pM |