TY - JOUR AU - Cai, C. AU - Niu, E. AU - Du, H. AU - Zhao, L. AU - Feng, Y. AU - Guo, W. PY - 2014 DA - 2014// TI - Genome-wide analysis of the WRKY transcription factor gene family in Gossypium raimondii and the expression of orthologs in cultivated tetraploid cotton JO - Crop J VL - 2 UR - https://doi.org/10.1016/j.cj.2014.03.001 DO - 10.1016/j.cj.2014.03.001 ID - Cai2014 ER - TY - JOUR AU - Huang, S. AU - Gao, Y. AU - Liu, J. AU - Peng, X. AU - Niu, X. AU - Fei, Z. PY - 2012 DA - 2012// TI - Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum JO - Mol Genet Genomics VL - 287 UR - https://doi.org/10.1007/s00438-012-0696-6 DO - 10.1007/s00438-012-0696-6 ID - Huang2012 ER - TY - JOUR AU - Eulgem, T. AU - Rushton, P. J. AU - Robatzek, S. AU - Somssich, I. E. PY - 2000 DA - 2000// TI - The WRKY superfamily of plant transcription factors JO - Trends Plant Sci VL - 5 UR - https://doi.org/10.1016/S1360-1385(00)01600-9 DO - 10.1016/S1360-1385(00)01600-9 ID - Eulgem2000 ER - TY - JOUR AU - Wu, K. -. L. AU - Guo, Z. -. J. AU - Wang, H. -. H. AU - Li, J. PY - 2005 DA - 2005// TI - The WRKY family of transcription factors in rice and Arabidopsis and their origins JO - DNA Res VL - 12 UR - https://doi.org/10.1093/dnares/12.1.9 DO - 10.1093/dnares/12.1.9 ID - Wu2005 ER - TY - JOUR AU - Guo, C. AU - Guo, R. AU - Xu, X. AU - Gao, M. AU - Li, X. AU - Song, J. PY - 2014 DA - 2014// TI - Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family JO - J Exp Bot VL - 65 UR - https://doi.org/10.1093/jxb/eru007 DO - 10.1093/jxb/eru007 ID - Guo2014 ER - TY - JOUR AU - He, H. AU - Dong, Q. AU - Shao, Y. AU - Jiang, H. AU - Zhu, S. AU - Cheng, B. PY - 2012 DA - 2012// TI - Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa JO - Plant Cell Rep VL - 31 UR - https://doi.org/10.1007/s00299-012-1241-0 DO - 10.1007/s00299-012-1241-0 ID - He2012 ER - TY - JOUR AU - Jiang, Y. AU - Duan, Y. AU - Yin, J. AU - Ye, S. AU - Zhu, J. AU - Zhang, F. PY - 2014 DA - 2014// TI - Genome-wide identification and characterization of the Populus WRKY transcription factor family and analysis of their expression in response to biotic and abiotic stresses JO - J Exp Bot VL - 65 UR - https://doi.org/10.1093/jxb/eru381 DO - 10.1093/jxb/eru381 ID - Jiang2014 ER - TY - STD TI - Llorca CM, Potschin M, Zentgraf U. bZIPs and WRKYs: two large transcription factor families executing two different functional strategies. Front Plant Sci. 2014;5. ID - ref8 ER - TY - JOUR AU - Ling, J. AU - Jiang, W. AU - Zhang, Y. AU - Yu, H. AU - Mao, Z. AU - Gu, X. PY - 2011 DA - 2011// TI - Genome-wide analysis of WRKY gene family in Cucumis sativus JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-471 DO - 10.1186/1471-2164-12-471 ID - Ling2011 ER - TY - JOUR AU - Du, L. AU - Chen, Z. PY - 2000 DA - 2000// TI - Identification of genes encoding receptor‐like protein kinases as possible targets of pathogen‐and salicylic acid‐induced WRKY DNA‐binding proteins in Arabidopsis JO - Plant J VL - 24 UR - https://doi.org/10.1046/j.1365-313x.2000.00923.x DO - 10.1046/j.1365-313x.2000.00923.x ID - Du2000 ER - TY - JOUR AU - Pandey, S. P. AU - Somssich, I. E. PY - 2009 DA - 2009// TI - The role of WRKY transcription factors in plant immunity JO - Plant Physiol VL - 150 UR - https://doi.org/10.1104/pp.109.138990 DO - 10.1104/pp.109.138990 ID - Pandey2009 ER - TY - JOUR AU - Zhou, X. AU - Wang, G. AU - Sutoh, K. AU - Zhu, J. -. K. AU - Zhang, W. PY - 2008 DA - 2008// TI - Identification of cold-inducible microRNAs in plants by transcriptome analysis JO - Biochim Biophys Acta VL - 1779 UR - https://doi.org/10.1016/j.bbagrm.2008.04.005 DO - 10.1016/j.bbagrm.2008.04.005 ID - Zhou2008 ER - TY - JOUR AU - Zou, C. AU - Jiang, W. AU - Yu, D. PY - 2010 DA - 2010// TI - Male gametophyte-specific WRKY34 transcription factor mediates cold sensitivity of mature pollen in Arabidopsis JO - J Exp Bot VL - 61 UR - https://doi.org/10.1093/jxb/erq204 DO - 10.1093/jxb/erq204 ID - Zou2010 ER - TY - JOUR AU - Jiang, Y. AU - Deyholos, M. K. PY - 2009 DA - 2009// TI - Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses JO - Plant Mol Biol VL - 69 UR - https://doi.org/10.1007/s11103-008-9408-3 DO - 10.1007/s11103-008-9408-3 ID - Jiang2009 ER - TY - JOUR AU - Wu, X. AU - Shiroto, Y. AU - Kishitani, S. AU - Ito, Y. AU - Toriyama, K. PY - 2009 DA - 2009// TI - Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter JO - Plant Cell Rep VL - 28 UR - https://doi.org/10.1007/s00299-008-0614-x DO - 10.1007/s00299-008-0614-x ID - Wu2009 ER - TY - JOUR AU - Jiang, Y. AU - Liang, G. AU - Yu, D. PY - 2012 DA - 2012// TI - Activated expression of WRKY57 confers drought tolerance in Arabidopsis JO - Mol Plant VL - 5 UR - https://doi.org/10.1093/mp/sss080 DO - 10.1093/mp/sss080 ID - Jiang2012 ER - TY - JOUR AU - Ren, X. AU - Chen, Z. AU - Liu, Y. AU - Zhang, H. AU - Zhang, M. AU - Liu, Q. PY - 2010 DA - 2010// TI - ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis JO - Plant J VL - 63 UR - https://doi.org/10.1111/j.1365-313X.2010.04248.x DO - 10.1111/j.1365-313X.2010.04248.x ID - Ren2010 ER - TY - JOUR AU - Shen, H. AU - Liu, C. AU - Zhang, Y. AU - Meng, X. AU - Zhou, X. AU - Chu, C. PY - 2012 DA - 2012// TI - OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice JO - Plant Mol Biol VL - 80 UR - https://doi.org/10.1007/s11103-012-9941-y DO - 10.1007/s11103-012-9941-y ID - Shen2012 ER - TY - STD TI - Zhang YJ, Wang LJ. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol Biol. 2005;5. doi:10.1186/1471-2148-5-1. ID - ref19 ER - TY - JOUR AU - Kalde, M. AU - Barth, M. AU - Somssich, I. E. AU - Lippok, B. PY - 2003 DA - 2003// TI - Members of the Arabidopsis WRKY group III transcription factors are part of different plant defense signaling pathways JO - Mol Plant Microbe Interact VL - 16 UR - https://doi.org/10.1094/MPMI.2003.16.4.295 DO - 10.1094/MPMI.2003.16.4.295 ID - Kalde2003 ER - TY - JOUR AU - Lynch, M. AU - Conery, J. S. PY - 2000 DA - 2000// TI - The evolutionary fate and consequences of duplicate genes JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5494.1151 DO - 10.1126/science.290.5494.1151 ID - Lynch2000 ER - TY - JOUR AU - Dwight, S. S. AU - Harris, M. A. AU - Dolinski, K. AU - Ball, C. A. AU - Binkley, G. AU - Christie, K. R. PY - 2002 DA - 2002// TI - Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.69 DO - 10.1093/nar/30.1.69 ID - Dwight2002 ER - TY - JOUR AU - Li, Z. AU - Jiang, H. AU - Zhou, L. AU - Deng, L. AU - Lin, Y. AU - Peng, X. PY - 2014 DA - 2014// TI - Molecular evolution of the HD-ZIP I gene family in legume genomes JO - Gene VL - 533 UR - https://doi.org/10.1016/j.gene.2013.09.084 DO - 10.1016/j.gene.2013.09.084 ID - Li2014 ER - TY - JOUR AU - Lin, Y. AU - Cheng, Y. AU - Jin, J. AU - Jin, X. AU - Jiang, H. AU - Yan, H. PY - 2014 DA - 2014// TI - Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0102825 DO - 10.1371/journal.pone.0102825 ID - Lin2014 ER - TY - JOUR AU - Cannon, S. B. AU - McCombie, W. R. AU - Sato, S. AU - Tabata, S. AU - Denny, R. AU - Palmer, L. PY - 2003 DA - 2003// TI - Evolution and microsynteny of the apyrase gene family in three legume genomes JO - Mol Genet Genomics VL - 270 UR - https://doi.org/10.1007/s00438-003-0928-x DO - 10.1007/s00438-003-0928-x ID - Cannon2003 ER - TY - JOUR AU - Maher, C. AU - Stein, L. AU - Ware, D. PY - 2006 DA - 2006// TI - Evolution of Arabidopsis microRNA families through duplication events JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4680506 DO - 10.1101/gr.4680506 ID - Maher2006 ER - TY - JOUR AU - Deleu, W. AU - González, V. AU - Monfort, A. AU - Bendahmane, A. AU - Puigdomènech, P. AU - Arús, P. PY - 2007 DA - 2007// TI - Structure of two melon regions reveals high microsynteny with sequenced plant species JO - Mol Genet Genomics VL - 278 UR - https://doi.org/10.1007/s00438-007-0277-2 DO - 10.1007/s00438-007-0277-2 ID - Deleu2007 ER - TY - JOUR AU - Song, Y. AU - Gao, J. PY - 2014 DA - 2014// TI - Genome-wide analysis of WRKY gene family in Arabidopsis lyrata and comparison with Arabidopsis thaliana and Populus trichocarpa JO - Chin Sci Bull VL - 59 UR - https://doi.org/10.1007/s11434-013-0057-9 DO - 10.1007/s11434-013-0057-9 ID - Song2014 ER - TY - JOUR AU - Chen, L. AU - Song, Y. AU - Li, S. AU - Zhang, L. AU - Zou, C. AU - Yu, D. PY - 2012 DA - 2012// TI - The role of WRKY transcription factors in plant abiotic stresses JO - Biochim Biophys Acta VL - 1819 UR - https://doi.org/10.1016/j.bbagrm.2011.09.002 DO - 10.1016/j.bbagrm.2011.09.002 ID - Chen2012 ER - TY - JOUR AU - Luo, X. AU - Bai, X. AU - Sun, X. AU - Zhu, D. AU - Liu, B. AU - Ji, W. PY - 2013 DA - 2013// TI - Expression of wild soybean WRKY20 in Arabidopsis enhances drought tolerance and regulates ABA signalling JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ert073 DO - 10.1093/jxb/ert073 ID - Luo2013 ER - TY - STD TI - Wang M, Vannozzi A, Wang G, Liang Y-H, Tornielli GB, Zenoni S et al. Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family. Horticulture Res. 2014;1. doi:10.1038/hortres.2014.16. ID - ref31 ER - TY - JOUR AU - Rushton, D. L. AU - Tripathi, P. AU - Rabara, R. C. AU - Lin, J. AU - Ringler, P. AU - Boken, A. K. PY - 2012 DA - 2012// TI - WRKY transcription factors: key components in abscisic acid signalling JO - Plant Biotechnol J VL - 10 UR - https://doi.org/10.1111/j.1467-7652.2011.00634.x DO - 10.1111/j.1467-7652.2011.00634.x ID - Rushton2012 ER - TY - JOUR AU - Yan, L. AU - Liu, Z. -. Q. AU - Xu, Y. -. H. AU - Lu, K. AU - Wang, X. -. F. AU - Zhang, D. -. P. PY - 2013 DA - 2013// TI - Auto- and cross-repression of three Arabidopsis WRKY transcription factors WRKY18, WRKY40, and WRKY60 negatively involved in ABA signaling JO - J Plant Growth Regul VL - 32 UR - https://doi.org/10.1007/s00344-012-9310-8 DO - 10.1007/s00344-012-9310-8 ID - Yan2013 ER - TY - STD TI - Wang L, Zhu W, Fang L, Sun X, Su L, Liang Z et al. Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera. BMC Plant Biol. 2014;14. doi:10.1186/1471-2229-14-103. ID - ref34 ER - TY - STD TI - Dittmar K, Liberles D. Evolution after gene duplication. John Wiley & Sons; 2011. ID - ref35 ER - TY - JOUR AU - Feng, L. AU - Chen, Z. AU - Ma, H. AU - Chen, X. AU - Li, Y. AU - Wang, Y. PY - 2014 DA - 2014// TI - The IQD gene family in soybean: structure, phylogeny, evolution and expression JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0110896 DO - 10.1371/journal.pone.0110896 ID - Feng2014 ER - TY - JOUR AU - Besseau, S. AU - Li, J. AU - Palva, E. T. PY - 2012 DA - 2012// TI - WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana JO - J Exp Bot VL - 63 UR - https://doi.org/10.1093/jxb/err450 DO - 10.1093/jxb/err450 ID - Besseau2012 ER - TY - JOUR AU - Gasteiger, E. AU - Gattiker, A. AU - Hoogland, C. AU - Ivanyi, I. AU - Appel, R. D. AU - Bairoch, A. PY - 2003 DA - 2003// TI - ExPASy: the proteomics server for in-depth protein knowledge and analysis JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg563 DO - 10.1093/nar/gkg563 ID - Gasteiger2003 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Saitou, N. AU - Nei, M. PY - 1987 DA - 1987// TI - The neighbor-joining method: a new method for reconstructing phylogenetic trees JO - Mol Biol Evol VL - 4 ID - Saitou1987 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - STD TI - Hu R, Qi G, Kong Y, Kong D, Gao Q, Zhou G. Comprehensive analysis of NAC domain transcription factor gene family in populus trichocarpa. BMC Plant Biol. 2010;10. doi:10.1186/1471-2229-10-145. ID - ref42 ER - TY - JOUR AU - Guo, A. -. Y. AU - Zhu, Q. -. H. AU - Chen, X. AU - Luo, J. -. C. PY - 2007 DA - 2007// TI - GSDS: a gene structure display server JO - Yi Chuan VL - 29 UR - https://doi.org/10.1360/yc-007-1023 DO - 10.1360/yc-007-1023 ID - Guo2007 ER - TY - STD TI - Bailey TL, Elkan C, editors. The value of prior knowledge in discovering motifs with MEME. Ismb; 1995. ID - ref44 ER - TY - JOUR AU - Cai, B. AU - Yang, X. AU - Tuskan, G. A. AU - Cheng, Z. -. M. PY - 2011 DA - 2011// TI - MicroSyn: A user friendly tool for detection of microsynteny in a gene family JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-79 DO - 10.1186/1471-2105-12-79 ID - Cai2011 ER - TY - JOUR AU - Wang, L. AU - Guo, K. AU - Li, Y. AU - Tu, Y. AU - Hu, H. AU - Wang, B. PY - 2010 DA - 2010// TI - Expression profiling and integrative analysis of the CESA/CSL superfamily in rice JO - BMC Plant Biol VL - 10 UR - https://doi.org/10.1186/1471-2229-10-282 DO - 10.1186/1471-2229-10-282 ID - Wang2010 ER - TY - JOUR AU - Zhang, X. AU - Feng, Y. AU - Cheng, H. AU - Tian, D. AU - Yang, S. AU - Chen, J. -. Q. PY - 2011 DA - 2011// TI - Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication JO - Mol Genet Genomics VL - 285 UR - https://doi.org/10.1007/s00438-010-0587-7 DO - 10.1007/s00438-010-0587-7 ID - Zhang2011 ER - TY - JOUR AU - Suyama, M. AU - Torrents, D. AU - Bork, P. PY - 2006 DA - 2006// TI - PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl315 DO - 10.1093/nar/gkl315 ID - Suyama2006 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: phylogenetic analysis by maximum likelihood JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Ma, H. AU - Feng, L. AU - Chen, Z. AU - Chen, X. AU - Zhao, H. AU - Xiang, Y. PY - 2014 DA - 2014// TI - Genome-wide identification and expression analysis of the IQD gene family in Populus trichocarpa JO - Plant Sci VL - 229 UR - https://doi.org/10.1016/j.plantsci.2014.08.017 DO - 10.1016/j.plantsci.2014.08.017 ID - Ma2014 ER - TY - JOUR AU - Schmittgen, T. D. AU - Livak, K. J. PY - 2008 DA - 2008// TI - Analyzing real-time PCR data by the comparative CT method JO - Nat Protoc VL - 3 UR - https://doi.org/10.1038/nprot.2008.73 DO - 10.1038/nprot.2008.73 ID - Schmittgen2008 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(−Delta Delta C) method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER - TY - STD TI - Bryfczynski S, editor. GraphPad: a CS2/CS7 tool for graph creation. Proceedings of the 47th Annual Southeast Regional Conference; 2009: ACM. ID - ref53 ER -