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Table 2 Properties of structural models of the cytochrome c/Apaf-1 complex as compared to the crystallographic data on the interactions of cytochrome c with the cytochrome bc 1 complex

From: Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly

Structure Solvation energy of the complex formation, kcal/mol Interface area, as % of the total solvent-accessible surface of cytochrome c
Apoptosome complex   
3j2t 1.4 16.0 %
cluspro −4.8 23.2 %
patchdock −5.9 26.2 %
patchdock’ −6.2 32.1 %
zdock1 −14.3 28.8 %
zdock2 −4.8 30.0 %
Cytochrome bc1 complex   
1kyo crystal −1.6 9.9 %
3cx5 crystal −1.2 9.9 %