Table 2 Whole-cell sequenced genomes already published
From: Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool
Spcies/Strain sequenced | Specimen origin | Sequencing technology | N reads | N scaffolds/contigs | N gaps |
|---|---|---|---|---|---|
Akkermansia muciniphila strain Amuc | Human stool | -SOLID | 4,235,342 | 1 scaffold | 56 gaps |
| Â | Â | -454 (shotgun, PE) | Â | Â | Â |
Chlamydia trachomatis [17] | Human vaginal swab | Illumina HiSeq 2000 | 70,201,544 | 85% aligned/reference (2.6xcov) | Â |
| Â | Â | Â | Â | 6% aligned (6xcov) | Â |
| Â | Â | -Sanger | NA | Complete genome (120 contigs) | Â |
Termit Group l StrRs-D17 [18] | Single host protist cell | -454 | |||
SAR324 clade of Deltaproteobacteria | Global ocean single cell marine sample | Illumina GA PE 100 pb | 67,995,232 | 646 Contigs | Â |