From: Structure based approach for understanding organism specific recognition of protein-RNA complexes
Organism | Prefered | Avoided |
---|---|---|
E. coli | Gly-C, Ala-C, Ser-C, Tyr-C, Asn-C, Leu-C | Tyr-A, Phe-C, Met-C, Pro-U, Thr-U, Gln-U |
H. sapiens | Val-A, Cys-A, Trp-G, His-U | Glu-A, Asn-G, Lys-G, Phe-C, Ser-c, Thr-C, Asp-C, Val-U, Leu-U, Ser-U |
S. cerevisiae | Tyr-A, Gln-A, Met-G, Phe-C, Met-C, Thr-C, Phe-U | Leu-A, Gly-G, Arg-G |
Thermophiles | Val-C, Leu-C, Ile-C, Trp-C, Trp-U | Ala-A, Val-A, Gln-A, Asp-G, Phe-C, Met-C, Ser-C, Ala-U, Phe-U, Ser-U, Asn-U, Asp-U |
Archaea | Trp-A, Lys-A, Ala-G, Val-G, Ile-G, Pro-C, Ile-U, Met-U, Ser-U, Cys-U, Glu-U | Leu-A, Phe-A, Gln-G, Ala-C, Leu-C, Ile-C, Met-C, Thr-C, Tyr-C, Asn-C, Phe-U |