TY - JOUR AU - Olovnikov, I. AU - Chan, K. AU - Sachidanandam, R. AU - Newman, D. K. AU - Aravin, A. A. PY - 2013 DA - 2013// TI - Bacterial argonaute samples the transcriptome to identify foreign DNA JO - Mol Cell VL - 51 UR - https://doi.org/10.1016/j.molcel.2013.08.014 DO - 10.1016/j.molcel.2013.08.014 ID - Olovnikov2013 ER - TY - JOUR AU - Swarts, D. C. AU - Jore, M. M. AU - Westra, E. R. AU - Zhu, Y. AU - Janssen, J. H. AU - Snijders, A. P. AU - Wang, Y. AU - Patel, D. J. AU - Berenguer, J. AU - Brouns, S. J. AU - van der Oost, J. PY - 2014 DA - 2014// TI - DNA-guided DNA interference by a prokaryotic Argonaute JO - Nature VL - 507 UR - https://doi.org/10.1038/nature12971 DO - 10.1038/nature12971 ID - Swarts2014 ER - TY - JOUR AU - Makarova, K. S. AU - Wolf, Y. I. AU - van der Oost, J. AU - Koonin, E. V. PY - 2009 DA - 2009// TI - Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements JO - Biol Direct VL - 4 UR - https://doi.org/10.1186/1745-6150-4-29 DO - 10.1186/1745-6150-4-29 ID - Makarova2009 ER - TY - JOUR AU - Hur, J. K. AU - Olovnikov, I. AU - Aravin, A. A. PY - 2014 DA - 2014// TI - Prokaryotic Argonautes defend genomes against invasive DNA JO - Trends Biochem Sci VL - 39 UR - https://doi.org/10.1016/j.tibs.2014.04.006 DO - 10.1016/j.tibs.2014.04.006 ID - Hur2014 ER - TY - JOUR AU - Vogel, J. PY - 2014 DA - 2014// TI - A bacterial seek-and-destroy system for foreign DNA JO - Science VL - 344 UR - https://doi.org/10.1126/science.1252962 DO - 10.1126/science.1252962 ID - Vogel2014 ER - TY - JOUR AU - Chak, L. L. AU - Okamura, K. PY - 2014 DA - 2014// TI - Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors JO - Front Genet VL - 5 UR - https://doi.org/10.3389/fgene.2014.00172 DO - 10.3389/fgene.2014.00172 ID - Chak2014 ER - TY - JOUR AU - Gagnon, K. T. AU - Li, L. AU - Chu, Y. AU - Janowski, B. A. AU - Corey, D. R. PY - 2014 DA - 2014// TI - RNAi factors are present and active in human cell nuclei JO - Cell Rep VL - 6 UR - https://doi.org/10.1016/j.celrep.2013.12.013 DO - 10.1016/j.celrep.2013.12.013 ID - Gagnon2014 ER - TY - JOUR AU - Maniataki, E. AU - Mourelatos, Z. PY - 2005 DA - 2005// TI - Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein JO - RNA VL - 11 UR - https://doi.org/10.1261/rna.2210805 DO - 10.1261/rna.2210805 ID - Maniataki2005 ER - TY - JOUR AU - Tan, G. S. AU - Garchow, B. G. AU - Liu, X. AU - Yeung, J. AU - Morris, J. P. AU - Cuellar, T. L. AU - McManus, M. T. AU - Kiriakidou, M. PY - 2009 DA - 2009// TI - Expanded RNA-binding activities of mammalian Argonaute 2 JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp812 DO - 10.1093/nar/gkp812 ID - Tan2009 ER - TY - JOUR AU - Li, J. AU - Kim, T. AU - Nutiu, R. AU - Ray, D. AU - Hughes, T. R. AU - Zhang, Z. PY - 2014 DA - 2014// TI - Identifying mRNA sequence elements for target recognition by human Argonaute proteins JO - Genome Res VL - 24 UR - https://doi.org/10.1101/gr.162230.113 DO - 10.1101/gr.162230.113 ID - Li2014 ER - TY - JOUR AU - Pillai, R. S. AU - Artus, C. G. AU - Filipowicz, W. PY - 2004 DA - 2004// TI - Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis JO - RNA VL - 10 UR - https://doi.org/10.1261/rna.7131604 DO - 10.1261/rna.7131604 ID - Pillai2004 ER - TY - JOUR AU - Pinder, B. D. PY - 2013 DA - 2013// TI - Smibert CA: microRNA-independent recruitment of Argonaute 1 to nanos mRNA through the Smaug RNA-binding protein JO - EMBO Rep VL - 14 UR - https://doi.org/10.1038/embor.2012.192 DO - 10.1038/embor.2012.192 ID - Pinder2013 ER - TY - JOUR AU - Deleavey, G. F. AU - Frank, F. AU - Hassler, M. AU - Wisnovsky, S. AU - Nagar, B. AU - Damha, M. J. PY - 2013 DA - 2013// TI - The 5′ binding MID domain of human Argonaute2 tolerates chemically modified nucleotide analogues JO - Nucleic Acid Ther VL - 23 UR - https://doi.org/10.1089/nat.2012.0393 DO - 10.1089/nat.2012.0393 ID - Deleavey2013 ER - TY - JOUR AU - Schirle, N. T. AU - MacRae, I. J. PY - 2012 DA - 2012// TI - The crystal structure of human Argonaute2 JO - Science VL - 336 UR - https://doi.org/10.1126/science.1221551 DO - 10.1126/science.1221551 ID - Schirle2012 ER - TY - JOUR AU - Lingel, A. AU - Simon, B. AU - Izaurralde, E. AU - Sattler, M. PY - 2003 DA - 2003// TI - Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain JO - Nature VL - 426 UR - https://doi.org/10.1038/nature02123 DO - 10.1038/nature02123 ID - Lingel2003 ER - TY - JOUR AU - Lingel, A. AU - Simon, B. AU - Izaurralde, E. AU - Sattler, M. PY - 2004 DA - 2004// TI - Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain JO - Nat Struct Mol Biol VL - 11 UR - https://doi.org/10.1038/nsmb777 DO - 10.1038/nsmb777 ID - Lingel2004 ER - TY - JOUR AU - Yan, K. S. AU - Yan, S. AU - Farooq, A. AU - Han, A. AU - Zeng, L. AU - Zhou, M. M. PY - 2003 DA - 2003// TI - Structure and conserved RNA binding of the PAZ domain JO - Nature VL - 426 UR - https://doi.org/10.1038/nature02129 DO - 10.1038/nature02129 ID - Yan2003 ER - TY - JOUR AU - Chiu, Y. L. PY - 2003 DA - 2003// TI - Rana TM: siRNA function in RNAi: a chemical modification analysis JO - RNA VL - 9 UR - https://doi.org/10.1261/rna.5103703 DO - 10.1261/rna.5103703 ID - Chiu2003 ER - TY - JOUR AU - Ui-Tei, K. AU - Naito, Y. AU - Zenno, S. AU - Nishi, K. AU - Yamato, K. AU - Takahashi, F. AU - Juni, A. AU - Saigo, K. PY - 2008 DA - 2008// TI - Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn042 DO - 10.1093/nar/gkn042 ID - Ui-Tei2008 ER - TY - JOUR AU - Lamberton, J. S. AU - Christian, A. T. PY - 2003 DA - 2003// TI - Varying the nucleic acid composition of siRNA molecules dramatically varies the duration and degree of gene silencing JO - Mol Biotechnol VL - 24 UR - https://doi.org/10.1385/MB:24:2:111 DO - 10.1385/MB:24:2:111 ID - Lamberton2003 ER - TY - JOUR AU - Nowak, M. AU - Wyszko, E. AU - Fedoruk-Wyszomirska, A. AU - Pospieszny, H. AU - Barciszewska, M. Z. AU - Barciszewski, J. PY - 2009 DA - 2009// TI - A new and efficient method for inhibition of RNA viruses by DNA interference JO - FEBS J VL - 276 UR - https://doi.org/10.1111/j.1742-4658.2009.07145.x DO - 10.1111/j.1742-4658.2009.07145.x ID - Nowak2009 ER - TY - JOUR AU - Moelling, K. AU - Matskevich, A. AU - Jung, J. S. PY - 2006 DA - 2006// TI - Relationship between retroviral replication and RNA interference machineries JO - Cold Spring Harb Symp Quant Biol VL - 71 UR - https://doi.org/10.1101/sqb.2006.71.010 DO - 10.1101/sqb.2006.71.010 ID - Moelling2006 ER - TY - JOUR AU - Huang, V. AU - Li, L. C. PY - 2014 DA - 2014// TI - Demystifying the nuclear function of Argonaute proteins JO - RNA Biol VL - 11 UR - https://doi.org/10.4161/rna.27604 DO - 10.4161/rna.27604 ID - Huang2014 ER - TY - JOUR AU - Toscano-Garibay, J. D. AU - Aquino-Jarquin, G. PY - 1839 DA - 1839// TI - Transcriptional regulation mechanism mediated by miRNA-DNA•DNA triplex structure stabilized by Argonaute JO - Biochim Biophys Acta VL - 2014 ID - Toscano-Garibay1839 ER - TY - JOUR AU - Koch, J. AU - Pfeil, H. V. PY - 1972 DA - 1972// TI - Transport of nuclear DNA into the cytoplasm in cultured animal cells. A survey JO - FEBS Lett VL - 24 UR - https://doi.org/10.1016/0014-5793(72)80824-X DO - 10.1016/0014-5793(72)80824-X ID - Koch1972 ER - TY - JOUR AU - Solage, A. AU - Laskov, R. PY - 1975 DA - 1975// TI - Characterization of cytoplasmic DNA of mouse-myeloma cells JO - Eur J Biochem VL - 60 UR - https://doi.org/10.1111/j.1432-1033.1975.tb20971.x DO - 10.1111/j.1432-1033.1975.tb20971.x ID - Solage1975 ER - TY - JOUR AU - Abken, H. AU - Hegger, R. AU - Bützler, C. AU - Willecke, K. PY - 1993 DA - 1993// TI - Short DNA sequences from the cytoplasm of mouse tumor cells induce immortalization of human lymphocytes in vitro JO - Proc Natl Acad Sci U S A VL - 90 UR - https://doi.org/10.1073/pnas.90.14.6518 DO - 10.1073/pnas.90.14.6518 ID - Abken1993 ER - TY - JOUR AU - Challen, C. AU - Adams, D. H. PY - 1988 DA - 1988// TI - The search for the DNA of the chick embryo fibroblast cytosolic complex JO - Int J Biochem VL - 20 UR - https://doi.org/10.1016/0020-711X(88)90350-3 DO - 10.1016/0020-711X(88)90350-3 ID - Challen1988 ER - TY - JOUR AU - Lerner, R. A. AU - Meinke, W. AU - Goldstein, D. A. PY - 1971 DA - 1971// TI - Membrane-associated DNA in the cytoplasm of diploid human lymphocytes JO - Proc Natl Acad Sci U S A VL - 68 UR - https://doi.org/10.1073/pnas.68.6.1212 DO - 10.1073/pnas.68.6.1212 ID - Lerner1971 ER - TY - JOUR AU - Cheng, J. AU - Torkamani, A. AU - Peng, Y. AU - Jones, T. M. AU - Lerner, R. A. PY - 2012 DA - 2012// TI - Plasma membrane associated transcription of cytoplasmic DNA JO - Proc Natl Acad Sci USA VL - 109 UR - https://doi.org/10.1073/pnas.1208716109 DO - 10.1073/pnas.1208716109 ID - Cheng2012 ER - TY - JOUR AU - Schneider, W. C. PY - 1977 DA - 1977// TI - Cytoplasmic DNA: Differentiation by reassociation kinetics JO - Biochem Biophys Res Commun VL - 74 UR - https://doi.org/10.1016/0006-291X(77)90626-X DO - 10.1016/0006-291X(77)90626-X ID - Schneider1977 ER - TY - JOUR AU - Fernandes-Alnemri, T. AU - Yu, J. W. AU - Datta, P. AU - Wu, J. AU - Alnemri, E. S. PY - 2009 DA - 2009// TI - AIM2 activates the inflammasome and cell death in response to cytoplasmic DNA JO - Nature VL - 458 UR - https://doi.org/10.1038/nature07710 DO - 10.1038/nature07710 ID - Fernandes-Alnemri2009 ER - TY - JOUR AU - Stetson, D. B. AU - Ko, J. S. AU - Heidmann, T. AU - Medzhitov, R. PY - 2008 DA - 2008// TI - Trex1 prevents cell-intrinsic initiation of autoimmunity JO - Cell VL - 134 UR - https://doi.org/10.1016/j.cell.2008.06.032 DO - 10.1016/j.cell.2008.06.032 ID - Stetson2008 ER - TY - JOUR AU - Barber, G. N. PY - 2011 DA - 2011// TI - Cytoplasmic DNA innate immune pathways JO - Immunol Rev VL - 243 UR - https://doi.org/10.1111/j.1600-065X.2011.01051.x DO - 10.1111/j.1600-065X.2011.01051.x ID - Barber2011 ER - TY - JOUR AU - Zhang, J. AU - Perry, G. AU - Smith, M. A. AU - Robertson, D. AU - Olson, S. J. AU - Graham, D. G. AU - Montine, T. J. PY - 1999 DA - 1999// TI - Parkinson’s disease is associated with oxidative damage to cytoplasmic DNA and RNA in substantia nigra neurons JO - Am J Pathol VL - 154 UR - https://doi.org/10.1016/S0002-9440(10)65396-5 DO - 10.1016/S0002-9440(10)65396-5 ID - Zhang1999 ER - TY - JOUR AU - Dombrowski, Y. AU - Peric, M. AU - Koglin, S. AU - Kammerbauer, C. AU - Göss, C. AU - Anz, D. AU - Simanski, M. AU - Gläser, R. AU - Harder, J. AU - Hornung, V. AU - Gallo, R. L. AU - Ruzicka, T. AU - Besch, R. AU - Schauber, J. PY - 2011 DA - 2011// TI - Cytosolic DNA triggers inflammasome activation in keratinocytes in psoriatic lesions JO - Sci Transl Med VL - 3 UR - https://doi.org/10.1126/scitranslmed.3002001 DO - 10.1126/scitranslmed.3002001 ID - Dombrowski2011 ER - TY - JOUR AU - Shimizu, A. AU - Nakatani, Y. AU - Nakamura, T. AU - Jinno-Oue, A. AU - Ishikawa, O. AU - Boeke, J. D. AU - Takeuchi, Y. AU - Hoshino, H. PY - 2014 DA - 2014// TI - Characterisation of cytoplasmic DNA complementary to non-retroviral RNA viruses in human cells JO - Sci Rep VL - 4 ID - Shimizu2014 ER - TY - JOUR AU - Smalheiser, N. R. PY - 2012 DA - 2012// TI - The search for endogenous siRNAs in the mammalian brain JO - Exp Neurol VL - 235 UR - https://doi.org/10.1016/j.expneurol.2011.10.015 DO - 10.1016/j.expneurol.2011.10.015 ID - Smalheiser2012 ER - TY - JOUR AU - Svoboda, P. PY - 2014 DA - 2014// TI - Renaissance of mammalian endogenous RNAi JO - FEBS Lett VL - S0014-5793 ID - Svoboda2014 ER - TY - JOUR AU - Adams, D. H. AU - McIntosh, A. A. G. PY - 1984 DA - 1984// TI - Studies on the cytosolic DNA of chick embryo fibroblasts and its uptake by recipient cultured cells JO - Int J Biochem VL - 17 UR - https://doi.org/10.1016/0020-711X(85)90035-7 DO - 10.1016/0020-711X(85)90035-7 ID - Adams1984 ER - TY - JOUR AU - Boon, R. A. AU - Vickers, K. C. PY - 2013 DA - 2013// TI - Intercellular transport of microRNAs JO - Arterioscler Thromb Vasc Biol VL - 33 UR - https://doi.org/10.1161/ATVBAHA.112.300139 DO - 10.1161/ATVBAHA.112.300139 ID - Boon2013 ER - TY - JOUR AU - Gibbings, D. J. AU - Ciaudo, C. AU - Erhardt, M. AU - Voinnet, O. PY - 2009 DA - 2009// TI - Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity JO - Nat Cell Biol VL - 11 UR - https://doi.org/10.1038/ncb1929 DO - 10.1038/ncb1929 ID - Gibbings2009 ER - TY - JOUR AU - Li, L. AU - Zhu, D. AU - Huang, L. AU - Zhang, J. AU - Bian, Z. AU - Chen, X. AU - Liu, Y. AU - Zhang, C. Y. AU - Zen, K. PY - 2012 DA - 2012// TI - Argonaute 2 complexes selectively protect the circulating microRNAs in cell-secreted microvesicles JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046957 DO - 10.1371/journal.pone.0046957 ID - Li2012 ER - TY - JOUR AU - Ratajczak, J. AU - Miekus, K. AU - Kucia, M. AU - Zhang, J. AU - Reca, R. AU - Dvorak, P. AU - Ratajczak, M. Z. PY - 2006 DA - 2006// TI - Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: evidence for horizontal transfer of mRNA and protein delivery JO - Leukemia VL - 20 UR - https://doi.org/10.1038/sj.leu.2404132 DO - 10.1038/sj.leu.2404132 ID - Ratajczak2006 ER - TY - JOUR AU - Valadi, H. AU - Ekström, K. AU - Bossios, A. AU - Sjöstrand, M. AU - Lee, J. J. AU - Lötvall, J. O. PY - 2007 DA - 2007// TI - Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells JO - Nat Cell Biol VL - 9 UR - https://doi.org/10.1038/ncb1596 DO - 10.1038/ncb1596 ID - Valadi2007 ER - TY - JOUR AU - Chen, X. AU - Liang, H. AU - Zhang, J. AU - Zen, K. AU - Zhang, C. Y. PY - 2012 DA - 2012// TI - Horizontal transfer of microRNAs: molecular mechanisms and clinical applications JO - Protein Cell VL - 3 UR - https://doi.org/10.1007/s13238-012-2003-z DO - 10.1007/s13238-012-2003-z ID - Chen2012 ER - TY - JOUR AU - Ronquist, K. G. AU - Ronquist, G. AU - Carlsson, L. AU - Larsson, A. PY - 2009 DA - 2009// TI - Human prostasomes contain chromosomal DNA JO - Prostate VL - 69 UR - https://doi.org/10.1002/pros.20921 DO - 10.1002/pros.20921 ID - Ronquist2009 ER - TY - JOUR AU - Ronquist, G. K. AU - Larsson, A. AU - Ronquist, G. AU - Isaksson, A. AU - Hreinsson, J. AU - Carlsson, L. AU - Stavreus-Evers, A. PY - 2011 DA - 2011// TI - Prostasomal DNA characterization and transfer into human sperm JO - Mol Reprod Dev VL - 78 UR - https://doi.org/10.1002/mrd.21327 DO - 10.1002/mrd.21327 ID - Ronquist2011 ER - TY - JOUR AU - Ronquist, G. K. AU - Larsson, A. AU - Stavreus-Evers, A. AU - Ronquist, G. PY - 2012 DA - 2012// TI - Prostasomes are heterogeneous regarding size and appearance but affiliated to one DNA-containing exosome family JO - Prostate VL - 72 UR - https://doi.org/10.1002/pros.22526 DO - 10.1002/pros.22526 ID - Ronquist2012 ER - TY - JOUR AU - Nilsson, J. AU - Skog, J. AU - Nordstrand, A. AU - Baranov, V. AU - Mincheva-Nilsson, L. AU - Breakefield, X. O. AU - Widmark, A. PY - 2009 DA - 2009// TI - Prostate cancer-derived urine exosomes: a novel approach to biomarkers for prostate cancer JO - Br J Cancer VL - 100 UR - https://doi.org/10.1038/sj.bjc.6605058 DO - 10.1038/sj.bjc.6605058 ID - Nilsson2009 ER - TY - JOUR AU - Cai, J. AU - Han, Y. AU - Ren, H. AU - Chen, C. AU - He, D. AU - Zhou, L. AU - Eisner, G. M. AU - Asico, L. D. AU - Jose, P. A. AU - Zeng, C. PY - 2013 DA - 2013// TI - Extracellular vesicle-mediated transfer of donor genomic DNA to recipient cells is a novel mechanism for genetic influence between cells JO - J Mol Cell Biol VL - 5 UR - https://doi.org/10.1093/jmcb/mjt011 DO - 10.1093/jmcb/mjt011 ID - Cai2013 ER - TY - JOUR AU - Waldenström, A. AU - Gennebäck, N. AU - Hellman, U. AU - Ronquist, G. PY - 2012 DA - 2012// TI - Cardiomyocyte microvesicles contain DNA/RNA and convey biological messages to target cells JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0034653 DO - 10.1371/journal.pone.0034653 ID - Waldenström2012 ER - TY - JOUR AU - Thakur, B. K. AU - Zhang, H. AU - Becker, A. AU - Matei, I. AU - Huang, Y. AU - Costa-Silva, B. AU - Zheng, Y. AU - Hoshino, A. AU - Brazier, H. AU - Xiang, J. AU - Williams, C. AU - Rodriguez-Barrueco, R. AU - Silva, J. M. AU - Zhang, W. AU - Hearn, S. AU - Elemento, O. AU - Paknejad, N. AU - Manova-Todorova, K. AU - Welte, K. AU - Bromberg, J. AU - Peinado, H. AU - Lyden, D. PY - 2014 DA - 2014// TI - Double-stranded DNA in exosomes: a novel biomarker in cancer detection JO - Cell Res VL - 24 UR - https://doi.org/10.1038/cr.2014.44 DO - 10.1038/cr.2014.44 ID - Thakur2014 ER - TY - JOUR AU - Balaj, L. AU - Lessard, R. AU - Dai, L. AU - Cho, Y. J. AU - Pomeroy, S. L. AU - Breakefield, X. O. AU - Skog, J. PY - 2011 DA - 2011// TI - Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences JO - Nat Commun VL - 2 UR - https://doi.org/10.1038/ncomms1180 DO - 10.1038/ncomms1180 ID - Balaj2011 ER - TY - JOUR AU - Krude, T. PY - 1999 DA - 1999// TI - Mimosine arrests proliferating human cells before onset of DNA replication in a dose-dependent manner JO - Exp Cell Res VL - 247 UR - https://doi.org/10.1006/excr.1998.4342 DO - 10.1006/excr.1998.4342 ID - Krude1999 ER - TY - JOUR AU - Kahlert, C. AU - Melo, S. A. AU - Protopopov, A. AU - Tang, J. AU - Seth, S. AU - Koch, M. AU - Zhang, J. AU - Weitz, J. AU - Chin, L. AU - Futreal, A. AU - Kalluri, R. PY - 2014 DA - 2014// TI - Identification of double-stranded genomic DNA spanning all chromosomes with mutated KRAS and p53 DNA in the serum exosomes of patients with pancreatic cancer JO - J Biol Chem VL - 289 UR - https://doi.org/10.1074/jbc.C113.532267 DO - 10.1074/jbc.C113.532267 ID - Kahlert2014 ER - TY - JOUR AU - Guescini, M. AU - Genedani, S. AU - Stocchi, V. AU - Agnati, L. F. PY - 2010 DA - 2010// TI - Astrocytes and Glioblastoma cells release exosomes carrying mtDNA JO - J Neural Transm VL - 117 UR - https://doi.org/10.1007/s00702-009-0288-8 DO - 10.1007/s00702-009-0288-8 ID - Guescini2010 ER - TY - JOUR AU - Swanson, D. R. AU - Smalheiser, N. R. PY - 1997 DA - 1997// TI - An interactive system for finding complementary literatures: a stimulus to scientific discovery JO - Artif Intell VL - 91 UR - https://doi.org/10.1016/S0004-3702(97)00008-8 DO - 10.1016/S0004-3702(97)00008-8 ID - Swanson1997 ER - TY - JOUR AU - Torvik, V. I. AU - Smalheiser, N. R. PY - 2007 DA - 2007// TI - A quantitative model for linking two disparate sets of articles in Medline JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm161 DO - 10.1093/bioinformatics/btm161 ID - Torvik2007 ER - TY - JOUR AU - Smalheiser, N. R. AU - Torvik, V. I. AU - Zhou, W. PY - 2009 DA - 2009// TI - Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE JO - Comput Meth Program Biomed VL - 94 UR - https://doi.org/10.1016/j.cmpb.2008.12.006 DO - 10.1016/j.cmpb.2008.12.006 ID - Smalheiser2009 ER - TY - JOUR AU - Smalheiser, N. R. PY - 2011 DA - 2011// TI - Literature-based discovery: beyond the ABCs JO - J Am Information Sci Technol VL - 63 UR - https://doi.org/10.1002/asi.21599 DO - 10.1002/asi.21599 ID - Smalheiser2011 ER - TY - JOUR AU - Agarwal, S. AU - Yu, H. AU - Kohane, I. PY - 2011 DA - 2011// TI - BioNØT: a searchable database of biomedical negated sentences JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-420 DO - 10.1186/1471-2105-12-420 ID - Agarwal2011 ER - TY - JOUR AU - Bandiera, S. AU - Rüberg, S. AU - Girard, M. AU - Cagnard, N. AU - Hanein, S. AU - Chrétien, D. AU - Munnich, A. AU - Lyonnet, S. AU - Henrion-Caude, A. PY - 2011 DA - 2011// TI - Nuclear outsourcing of RNA interference components to human mitochondria JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0020746 DO - 10.1371/journal.pone.0020746 ID - Bandiera2011 ER - TY - JOUR AU - Mashburn-Warren, L. M. AU - Whiteley, M. PY - 2006 DA - 2006// TI - Special delivery: vesicle trafficking in prokaryotes JO - Mol Microbiol VL - 61 UR - https://doi.org/10.1111/j.1365-2958.2006.05272.x DO - 10.1111/j.1365-2958.2006.05272.x ID - Mashburn-Warren2006 ER - TY - JOUR AU - Mashburn-Warren, L. AU - McLean, R. J. AU - Whiteley, M. PY - 2008 DA - 2008// TI - Gram-negative outer membrane vesicles: beyond the cell surface JO - Geobiology VL - 6 UR - https://doi.org/10.1111/j.1472-4669.2008.00157.x DO - 10.1111/j.1472-4669.2008.00157.x ID - Mashburn-Warren2008 ER - TY - JOUR AU - Yaron, S. AU - Kolling, G. L. AU - Simon, L. AU - Matthews, K. R. PY - 2000 DA - 2000// TI - Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria JO - Appl Environ Microbiol VL - 66 UR - https://doi.org/10.1128/AEM.66.10.4414-4420.2000 DO - 10.1128/AEM.66.10.4414-4420.2000 ID - Yaron2000 ER - TY - JOUR AU - Pérez-Cruz, C. AU - Carrión, O. AU - Delgado, L. AU - Martinez, G. AU - López-Iglesias, C. AU - Mercade, E. PY - 2013 DA - 2013// TI - New type of outer membrane vesicle produced by the Gram-negative bacterium Shewanella vesiculosa M7T: implications for DNA content JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.03657-12 DO - 10.1128/AEM.03657-12 ID - Pérez-Cruz2013 ER - TY - JOUR AU - Kadurugamuwa, J. L. AU - Beveridge, T. J. PY - 1999 DA - 1999// TI - Membrane vesicles derived from Pseudomonas aeruginosa and Shigella flexneri can be integrated into the surfaces of other gram-negative bacteria JO - Microbiology VL - 145 UR - https://doi.org/10.1099/13500872-145-8-2051 DO - 10.1099/13500872-145-8-2051 ID - Kadurugamuwa1999 ER - TY - JOUR AU - Dorward, D. W. AU - Garon, C. F. AU - Judd, R. C. PY - 1989 DA - 1989// TI - Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae JO - J Bacteriol VL - 171 ID - Dorward1989 ER - TY - JOUR AU - Nieuwland, R. AU - Sturk, A. PY - 2010 DA - 2010// TI - Why do cells release vesicles? JO - Thromb Res VL - 125 UR - https://doi.org/10.1016/j.thromres.2010.01.037 DO - 10.1016/j.thromres.2010.01.037 ID - Nieuwland2010 ER - TY - JOUR AU - Deatherage, B. L. AU - Cookson, B. T. PY - 2012 DA - 2012// TI - Membrane vesicle release in bacteria, eukaryotes, and archaea: a conserved yet underappreciated aspect of microbial life JO - Infect Immun VL - 80 UR - https://doi.org/10.1128/IAI.06014-11 DO - 10.1128/IAI.06014-11 ID - Deatherage2012 ER - TY - JOUR AU - Aravind, L. AU - Watanabe, H. AU - Lipman, D. J. AU - Koonin, E. V. PY - 2000 DA - 2000// TI - Lineage-specific loss and divergence of functionally linked genes in eukaryotes JO - Proc Natl Acad Sci U S A VL - 97 UR - https://doi.org/10.1073/pnas.200346997 DO - 10.1073/pnas.200346997 ID - Aravind2000 ER - TY - JOUR AU - Patel DJ, M. J. B. Y. Y. R. M. G. P. Y. T. T. PY - 2005 DA - 2005// TI - Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein JO - Nature VL - 434 UR - https://doi.org/10.1038/nature03514 DO - 10.1038/nature03514 ID - Patel DJ2005 ER - TY - JOUR AU - Yuan, Y. R. AU - Pei, Y. AU - Ma, J. B. AU - Kuryavyi, V. AU - Zhadina, M. AU - Meister, G. AU - Chen, H. Y. AU - Dauter, Z. AU - Tuschl, T. AU - Patel, D. J. PY - 2005 DA - 2005// TI - Crystal structure of A. aeolicus argonaute a site-specific DNA-guided endoribonuclease provides insights into RISC-mediated mRNA cleavage JO - Mol Cell VL - 19 UR - https://doi.org/10.1016/j.molcel.2005.07.011 DO - 10.1016/j.molcel.2005.07.011 ID - Yuan2005 ER - TY - JOUR AU - Burroughs, A. M. AU - Iyer, L. M. AU - Aravind, L. PY - 2013 DA - 2013// TI - Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes JO - Biol Direct VL - 8 UR - https://doi.org/10.1186/1745-6150-8-13 DO - 10.1186/1745-6150-8-13 ID - Burroughs2013 ER - TY - JOUR AU - Burroughs, A. M. AU - Ando, Y. AU - Aravind, L. PY - 2014 DA - 2014// TI - New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing JO - Wiley Interdiscip Rev RNA VL - 5 UR - https://doi.org/10.1002/wrna.1210 DO - 10.1002/wrna.1210 ID - Burroughs2014 ER - TY - JOUR AU - Weinberg, R. PY - 2010 DA - 2010// TI - Point: Hypotheses first JO - Nature VL - 464 UR - https://doi.org/10.1038/464678a DO - 10.1038/464678a ID - Weinberg2010 ER - TY - JOUR AU - Golub, T. PY - 2010 DA - 2010// TI - Counterpoint: Data first JO - Nature VL - 464 UR - https://doi.org/10.1038/464679a DO - 10.1038/464679a ID - Golub2010 ER - TY - JOUR AU - Piriyapongsa, J. AU - Jordan, I. K. AU - Conley, A. B. AU - Ronan, T. AU - Smalheiser, N. R. PY - 2011 DA - 2011// TI - Transcription factor binding sites are highly enriched within microRNA precursor sequences JO - Biol Direct VL - 6 UR - https://doi.org/10.1186/1745-6150-6-61 DO - 10.1186/1745-6150-6-61 ID - Piriyapongsa2011 ER -