A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data

Biology Direct

Table 3 Dataset’s properties

Dataset	Mark	GEO accession	Number of sequences	Shortest sequence (residues)	Longest sequence (residues)	Total length (residues)	Size (FASTA format)	Size (BED format)	Reference
DM230	PolII (RNA polymerase II)	GSM722763	105	157	1728	47242	49 KB	5 KB	[82]
DM05	p300 (co-activator protein)	GSM722762	142	130	1214	50318	53 KB	7 KB	[82]
DM254	CTCF (insulator binding protein)	GSM722759	4009	94	2374	1518265	1604 KB	181 KB	[82]
DM01	H3K4me1 (histone H3 lysine 4 monomethylation)	GSM722760	2001	175	8520	1856431	1871 KB	88 KB	[82]
DM721	H3K27ac (H3 lysine 27 acetylation)	GSM851275	4005	255	16542	5429909	5423 KB	180 KB	[82]

ISSN: 1745-6150