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Table 2 M. abscessus HGT cases

From: Mycobacteriophage-drived diversification of Mycobacterium abscessus

Putative HGT Homology Parent species Recipient species Donor species Nb duplications before parent
1 PHAGE_Mycoba_Peaches-gi|282598664|ref|YP_003358761.1|gp58[Mycobacterium_phage_Peaches] [M93] [6G-0125-R] [M93] 5
2 PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] [PSEUDO ~ −5S-0421] [M94] [M93 M115] 4
3 PHAGE_Mycoba_LeBron-gi|304360967|ref|YP_003857149.1|gp18[Mycobacterium_phage_LeBron] [M115] [M172] [M115] 2
4 PHAGE_Mycoba_Giles-gi|160700672|ref|YP_001552352.1|gp23[Mycobacterium_phage_Giles] [M94] [6G-0728-R] [M94] 5
5 PHAGE_Mycoba_Che9c-gi|29566118|ref|NP_817687.1|gp10[Mycobacterium_phage_Che9c] [M18] [3A-0122_S] [M18] 2
6 PHAGE_Mycoba_Pukovnik-gi|192824238|ref|YP_001994879.1|gp62[Mycobacterium_phage_Pukovnik] [M154] [M115] [M154] 5
7 PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c] [5S-0921] [4S-0726] [5S-0921] 4
8 PHAGE_Salmon_PVP_SE1-gi|363539742|ref|YP_004894027.1|hypotheticalprotein[SalmonellaphagePVP-SE1] [M. massiliense T] [M24] [M. massiliense T] 5
9 PHAGE_Rhodoc_REQ3-gi|372449972|ref|YP_005087193.1|phageintegrase[RhodococcusphageREQ3] [M172] [3A_0930_S] [M172] 3
10 PHAGE_Salmon_PVP_SE1-gi|363539618|ref|YP_004893903.1|phosphoribosylpyrophosphatesynthetase[SalmonellaphagePVP-SE1] [3A-0122_S1] [M. massiliense T] [3A-0122_S1] 5
11 PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna] [M172] [M94] [M172] 5
12 PHAGE_Mycoba_Omega-gi|29566822|ref|NP_818386.1|gp85[Mycobacterium_phage_Omega] [M115] [M24] [M115] 5
13 PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40] [M24] [M94] [M24] 6
14 PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40] [PSEUDO ~ − M159] [M24] [M172 3A-0122_S6 3A-0122_S2 3A-0122_S4 47 J26] 1
15 PHAGE_Acanth_mimivirus-gi|311977570|ref|YP_003986690.1|DNAtopoisomerase1b[Acanthamoebapolyphagamimivirus] [3A-0122_S7] [3A-0122_S5] [3A-0122_S7] 2
16 PHAGE_Rhodoc_RER2-gi|372449922|ref|YP_005087145.1|hypotheticalprotein[RhodococcusphageRER2] [M24] [3A-0731] [M24] 3
17 PHAGE_Aeromo_31-gi|66391812|ref|YP_238737.1|hypotheticalproteinPHG31p8[Aeromonas_phage_31] [4S-0726] [4S-0303] [4S-0726] 6
18 PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase[Lactococcus_phage_P087] [47 J26] [5S-0708] [47 J26] 6
19 PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna] [M172] [M94] [M172] 5
20 PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] [3A-0122_S5] [M94] [3A-0122_S5] 2
21 PHAGE_Acanth_mimivirus-gi|311977513|ref|YP_003986633.1|putativedTDP-D-glucose4,6-dehydratase[Acanthamoebapolyphagamimivirus] [3A-0122_S4] [4S-0726-RA] [3A-0122_S4] 4
22 PHAGE_Bacill_36-gi|156564011|ref|YP_001429750.1|PcrAhelicase[Bacillus_phage_0305phi8_36] [3A-0122_S7] [3A-0119-R] [3A-0122_S7] 3
23 PHAGE_Mycoba_Che9c-gi|29566174|ref|NP_817745.1|gp68[Mycobacterium_phage_Che9c] [M18] [M94] [M18] 3
24 PHAGE_Mycoba_Che8-gi|29565783|ref|NP_817355.1|gp17[Mycobacterium_phage_Che8] [M24] [M172 3A-0122_S4 3A-0122_S2 47 J26] [M24] 2
25 PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c] [M115] [4S-0116_S] [M115] 3
26 PHAGE_Microm_MpV1-gi|313768434|ref|YP_004062114.1|hypotheticalprotein[Micromonassp.RCC1109virusMpV1] [M115] [M94] [M115] 3
27 PHAGE_Mycoba_Pipefish-gi|109521870|ref|YP_655307.1|gp30[Mycobacterium_phage_Pipefish] [M18] [M172] [M18] 1
28 PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] [M. bolletii T] [4S-0726-RA] [M. bolletii T] 7
29 PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase [Lactococcus_phage_P087] [M24] [M. bolletii T] [M24] 7
30 PHAGE_Mycoba_Omega-gi|29566768|ref|NP_818332.1|gp31[Mycobacterium_phage_Omega] [M94] [6G-1108] [M94] 3
31 PHAGE_Burkho_phi1026b-gi|38707948|ref|NP_945089.1|gp58[Burkholderia_phage_phi1026b] [PSEUDO ~ −M154] [M. bolletii T] [M. massiliense T M154 M172 M159] 6
32 PHAGE_Mycoba_Cjw1-gi|29565933|ref|NP_817504.1|gp55[Mycobacterium_phage_Cjw1] [PSEUDO ~ −M159] [M. bolletii T] [M172 3A-0122_S0 1S-152-0930 3A-0122_S1] 2
33 PHAGE_Brocho_BL3-gi|327409421|ref|YP_004301563.1|gp29[BrochothrixphageBL3] [M115] [M24] [M115] 5