Table 4 Frequency of best motifs discovered using MERCI software in IFN-γ epitopes and Rest of cytokine inducing epitopes from IFNgOnly dataset
From: Designing of interferon-gamma inducing MHC class-II binders
Class of Motifs | Found in IFN Epitopes | Frequency | Found in Rest-epitopes | Frequency |
|---|---|---|---|---|
None | F-QP-Q | 42 | ANKIR | 17 |
Koolman-Rohm | R[basic]-R-[aliphatic] [neutral] | 51 | [neutral]K[aliphatic]RE | 17 |
Betts-Russell (Hydorphobic) | YR[aliphatic] | 63 | [hydrophobic]-N[hydrophobic][small]K-[R] | 29 |
Betts-Russell (Polar) | [polar]-YR[aliphatic] | 53 | [polar]-N[hydrophobic] [small]K-R | 28 |
Betts-Russell (Small) | small-YR[aliphatic] | 54 | PN[hydrophobic][small]-[positive]-[polar] | 32 |