Table 1 The ancestral NCLDV genes represented in Pandoraviruses
Gene/NCVOG | P. dulcisgenes | P. salinusgenes | Presence in the 7 NCLDV familiesa | Best hit for Pandoravirusesb/ % identity/alignment length |
|---|---|---|---|---|
YqaJ viral recombinase family (pfam09588)/NCVOG1192 | 516302776 | 516304314 | 4 | Guillardia theta CCMP2712 (Cryptophyta) /31/212 |
D5-like helicase-primase/NCVOG0023 | 516302795 | 516304338 | 7 | Bathycoccus sp. RCC1105 virus BpV2 (Phycodnaviridae) /33/579 |
ribonucleoside diphosphate reductase, alpha subunit/NCVOG1353 | 516303570 | 516306316 | 5 | Thiothrix flexilis (Proteobacteria) /36/1011 |
Ribonucleotide reductase small subunit; apparent eukaryotic origin/NCVOG0276 | 516302977 | 516306307 | 7 | Thalassiosira pseudonana CCMP1335 (Stramenopiles) /75/216 |
dUTPase (cl00493)/NCVOG1068 | 516303522 | 516305829 | 3 | Hordeum vulgare subsp. vulgare (Viridiplantae) /58/153 |
DNA or RNA helicases of superfamily II (COG1061) (A18hel)/NCVOG0076 | 516302732 | 516304266 | 5 | Ectocarpus siliculosus virus 1 (Phycodnaviridae) /35/238 |
pfam04947, Poxvirus Late Transcription Factor VLTF3 like (A2L)/NCVOG0262 | 516302769, 516303263 | 516304304, 516305311 | 7 | Emiliania huxleyi virus 202 (Phycodnaviridae) /34/264 |
Transcription factor S-II (TFIIS)-domain-containing protein/NCVOG0272 | 516303039 | 516304685 | 7 | Mus musculus (Opisthokonta) /27/278 |
Nudix hydrolase (D10 ortholog)/NCVOG0236 | Â | 516305246 | 5 | Vitis vinifera (Viridiplantae) /28/226 |
A32-like packaging ATPase/NCVOG0249 | 516302762, 516303626 | 516306303, 516303793, 516305958, 516303807, 516305953 | 7 | Ostreococcus tauri virus 2 (Phycodnaviridae) /45/247 |
uracil-DNA glycosylase/NCVOG1115 | 516303571 | 516305889 | 3 | Congregibacter litoralis (Proteobacteria) /50/242 |
cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases/NCVOG0040 | 516303124, 516303141 | 516304931, 516304951 | 3 | Lausannevirus (Marseillevirus family) /41/149 |
RING-finger-containing E3 ubiquitin ligase (COG5432: RAD18)/NCVOG0330 | 516302773 | Â | 6 | Vitis vinifera (Viridiplantae) /43/76 |
DNA-directed RNA polymerase subunit alpha/NCVOG0274 | 516302695 | 516306301 | 7 | Cyanidioschyzon merolae strain 10D (Rhodophyta) /35/877 |
DNA-directed RNA polymerase subunit beta /NCVOG0271 | 516302872 | 516306305 | 7 | Capsella rubella (Viridiplantae) /38/1283 |
disulfide (thiol) oxidoreductase; Erv1/Alr family (pfam04777)/NCVOG0052 | 516302900 | 516304490 | 7 | Setosphaeria turcica Et28A (Opisthokonta) /37/123 |