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Table 1 The ancestral NCLDV genes represented in Pandoraviruses

From: Pandoraviruses are highly derived phycodnaviruses

Gene/NCVOG P. dulcisgenes P. salinusgenes Presence in the 7 NCLDV familiesa Best hit for Pandoravirusesb/ % identity/alignment length
YqaJ viral recombinase family (pfam09588)/NCVOG1192 516302776 516304314 4 Guillardia theta CCMP2712 (Cryptophyta) /31/212
D5-like helicase-primase/NCVOG0023 516302795 516304338 7 Bathycoccus sp. RCC1105 virus BpV2 (Phycodnaviridae) /33/579
ribonucleoside diphosphate reductase, alpha subunit/NCVOG1353 516303570 516306316 5 Thiothrix flexilis (Proteobacteria) /36/1011
Ribonucleotide reductase small subunit; apparent eukaryotic origin/NCVOG0276 516302977 516306307 7 Thalassiosira pseudonana CCMP1335 (Stramenopiles) /75/216
dUTPase (cl00493)/NCVOG1068 516303522 516305829 3 Hordeum vulgare subsp. vulgare (Viridiplantae) /58/153
DNA or RNA helicases of superfamily II (COG1061) (A18hel)/NCVOG0076 516302732 516304266 5 Ectocarpus siliculosus virus 1 (Phycodnaviridae) /35/238
pfam04947, Poxvirus Late Transcription Factor VLTF3 like (A2L)/NCVOG0262 516302769, 516303263 516304304, 516305311 7 Emiliania huxleyi virus 202 (Phycodnaviridae) /34/264
Transcription factor S-II (TFIIS)-domain-containing protein/NCVOG0272 516303039 516304685 7 Mus musculus (Opisthokonta) /27/278
Nudix hydrolase (D10 ortholog)/NCVOG0236   516305246 5 Vitis vinifera (Viridiplantae) /28/226
A32-like packaging ATPase/NCVOG0249 516302762, 516303626 516306303, 516303793, 516305958, 516303807, 516305953 7 Ostreococcus tauri virus 2 (Phycodnaviridae) /45/247
uracil-DNA glycosylase/NCVOG1115 516303571 516305889 3 Congregibacter litoralis (Proteobacteria) /50/242
cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases/NCVOG0040 516303124, 516303141 516304931, 516304951 3 Lausannevirus (Marseillevirus family) /41/149
RING-finger-containing E3 ubiquitin ligase (COG5432: RAD18)/NCVOG0330 516302773   6 Vitis vinifera (Viridiplantae) /43/76
DNA-directed RNA polymerase subunit alpha/NCVOG0274 516302695 516306301 7 Cyanidioschyzon merolae strain 10D (Rhodophyta) /35/877
DNA-directed RNA polymerase subunit beta /NCVOG0271 516302872 516306305 7 Capsella rubella (Viridiplantae) /38/1283
disulfide (thiol) oxidoreductase; Erv1/Alr family (pfam04777)/NCVOG0052 516302900 516304490 7 Setosphaeria turcica Et28A (Opisthokonta) /37/123
  1. a)The families are: Poxviridae, Asfarviridae, Iridoviridae, Ascoviridae, Marseilleviridae, Phycodnaviridae, Mimiviridae.
  2. b)Genebank IDs of the genes for which the best hit is included are shown in bold.