Skip to main content

Advertisement

Table 3 GC-content of nucleotide sequences corresponding to the trimmed orthologous protein set

From: Deep transcriptome-sequencing and proteome analysis of the hydrothermal vent annelid Alvinella pompejana identifies the CvP-bias as a robust measure of eukaryotic thermostability

Species GC (%) GC enrichment relative to mean GC total (%)
  #1 #2 #3 #1 #2 #3  
H. sapiens 56.23 38.06 54.67 1.05 1.02 1.09 49.65
S. cerevisiae 46.54 35.51 38.25 0.87 0.95 0.76 40.1
C. elegans 54.83 37.63 42.69 1.03 1.01 0.85 45.05
C. teleta 54.46 37.32 55.46 1.02 1 1.11 49.08
H. robusta 49.2 35.62 46.4 0.92 0.96 0.93 43.74
D. melanogaster 56.98 37.57 69.85 1.07 1.01 1.39 54.8
A. pompejana 52.2 36.42 41.08 0.98 0.98 0.82 43.23
C. thermophilum 59.75 41.02 70.83 1.12 1.1 1.41 57.2
D. rerio 55.62 37.68 57.52 1.04 1.01 1.15 50.27
L. gigantea 47.59 35.77 24.82 0.89 0.96 0.49 36.06
mean 53.34 37.26 50.16     46.919
  1. GC-content (total and at different codon positions) in the orthologous set and GC-content enrichment, relative to the mean of each species studied at each position.