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Figure 7 | Biology Direct

Figure 7

From: Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios

Figure 7

The artificial species tree S * used to simulate sets { G j } of gene trees (40 species). The tree root is denoted by R. One of the simulated sets {G j } is presented in Additional file 3. The Super3GL program applied to {G j } reconstructed the known supertree S* in 95% cases. The total mapping cost equals 97443. Leaf notations: Archaea: Archaeoglobus fulgidus (Afu), Halobacterium sp. NRC-1 (Hbs), Methanococcus jannaschii (Mja), Methanobacterium thermoautotrophicum (Mth), Thermoplasma acidophilum (Tac), Thermoplasma volcanium (Tvo), Pyrococcus horikoshii (Pho), Pyrococcus abyssi (Pab), Aeropyrum pernix (Ape), Sulfolobus solfataricus (Sso); Gram-positive bacteria: Streptococcus pyogenes (Spy), Bacillus subtilis (Bsu), Bacillus halodurans (Bha), Lactococcus lastis (Lla), Staphylococcus aureus (Sau), Ureaplasma urealyticum (Uur), Mycoplasma pneumoniae (Mpn), Mycoplasma genitalium (Mge); α-Proteobacteria: Mesorhizobium loti (Mlo), Caulobacter crescentus (Ccr), Rickettsia prowazekii (Rpr); β-Proteobacteria: Neisseria meningitidis MC58 (Nme); γ-Proteobacteria: Escherichia coli K12 (Eco), Buchnera sp. APS (Buc), Pseudomonas aeruginosa (Pae), Vibrio cholerae (Vch), Haemophilus influenzae (Hin), Pasteurella multocida (Pmu), Xylella fastidiosa (Xfa); ε-Proteobacteria: Helicobacter pylori (Hpy), Campylobacter jejuni (Cje); Chlamydia: Chlamydia trachomatis (Ctr), Chlamydia pneumoniae (Cpn); Spirohetes: Treponema pallidum (Tpa), Borrelia burgdorferi (Bbu); others: Deinococcus radiodurans (Dra), Mycobacterium tuberculosis (Mtu), Synechocystis (Syn), Aquifex aeolicus (Aae), Thermotoga maritime (Tma).

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