Gene | AGI locus | Predicted AS event | Fragment size, bp | Confirmed by |
---|---|---|---|---|
LHY | AT1G01060.2 | Retained intron 4 (AT1G01060.2) | 224 | RT-PCR, qRT-PCR, Sanger sequencing |
AT1G01060.3 | Retained intron 9 (AT1G01060.3) | 188 | RT-PCR | |
LCL1 | AT5G02840.1 | Retained intron 7 | 230 | RT-PCR |
AT5G02840.1 | Retained intron 8 | 135 | RT-PCR | |
AT5G02840.3 | ||||
CCA1 | AT2G46830.1 | Retained intron 4 | 224 | RT-PCR, qRT-PCR, Sanger sequencing |
PRR7 | AT5G02810 | Retained intron 3 | 208 | RT-PCR, Sanger sequencing |
PRR9 | AT2G46790 | Retained intron 3 | 172 | RT-PCR |
CIR1, RVE2 | AT5G37260 | Alternative Poison Cassette Exon (PCE) in intron 1 | 218 | RT-PCR, Sanger sequencing |
CIR1, RVE2 | AT5G37260 | Retained intron 3 | 225 | RT-PCR, Sanger sequencing |
CKB3 | AT3G60250 | Retained intron 3 | 153 | RT-PCR |
Retained intron 4 | 272 | RT-PCR | ||
ASG4 | AT1G01520 | Retained intron 6 | 345 | RT-PCR |
RVE7, EPR1 | AT1G18330 | Retained intron 1 | 213 | RT-PCR |
RVE8, LCL5 | AT3G09600 | Retained intron 7 | 390 | RT-PCR |
Retained intron 8 | 589 | RT-PCR | ||
CCR2, GRP7 | AT2G21660 | Retained portion of the intron 1 (alternative donor splice site) | 184 | RT-PCR, qRT-PCR, Sanger sequencing |
CCR1, GRP8 | AT4G39260 | Retained portion of the intron 1 (alternative donor splice site) | 188 | RT-PCR |