Skip to main content

Table 2 Running time

From: Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data

 

GSM487450

GSM487448

Raw conversion

5

7

Quality control

6

5

Alignment

40

43

Peak Calling

30

38

Genomic annotation

64

1

bigwig/tdf conversion

3

6

Total

147

100

  1. FC running time in minutes using two different ChIP experiments (GEO accession numbers: GSM487450 and GSM487448) against the correspondent input DNA (GSM487453). Test were run on a machine with four Intel(R) Xeon(R) E7450 core CPU (2.40 GHz) and 4 GB RAM.
Back to article page

Biology Direct

ISSN: 1745-6150

Contact us