Table 1 Number of sequences and gene families in the genome networks, classified by functional categories

RNA processing and modification

A

0

0

0

0

Chromatin structure and dynamics

B

0

0

0

0

Translation, ribosomal structure and biogenesis

J

28

120

2

4

Transcription

K

131

255

18

27

Replication, recombination and repair

L

1838

3670

68

94

Cellular Processes and Signalling

Cell cycle control, cell division, chromosome partitioning

D

12

15

1

1

Signal transduction mechanisms

T

82

294

11

24

Defense mechanisms

V

22

148

3

9

Nuclear structure

Y

0

0

0

0

Cell wall/membrane/envelope biogenesis

M

56

295

5

13

Cell motility

N

3

69

1

5

Extracellular structures

W

0

0

0

0

Cytoskeleton

Z

0

0

0

0

Posttranslational modification, protein turnover, chaperones

O

0

50

0

4

Intracellular trafficking, secretion, and vesicular transport

U

5

94

2

13

Metabolism

Energy production and conversion

C

0

56

0

5

Amino acid transport and metabolism

E

6

40

2

6

Nucleotide transport and metabolism

F

0

28

0

1

Carbohydrate transport and metabolism

G

23

159

6

8

Coenzyme transport and metabolism

H

49

3

2

1

Lipid transport and metabolism

I

0

13

0

1

Inorganic ion transport and metabolism

P

67

371

4

21

Secondary metabolites biosynthesis, transport and catabolism

Q

16

56

2

4

Poorly characterized

General function prediction only

R

120

806

19

52

Function unknown

S

138

885

20

45

Unknown by RPS-Blast

X

1832

4589

260

356